A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set.
ffnet is a fast and easy-to-use feed-forward neural network training solution for python. Many nice features are implemented: arbitrary network connectivity, automatic data normalization, very efficient training tools, network export to fortran code. Now ffnet has also a GUI called ffnetui.
Mantid Project (www.mantidproject.org)
The open source advanced command-line calculator
Advanced Trigonometry Calculator is a rock-solid calculator allowing you perform advanced complex math calculations. Enter your complex math expression on its integrity and in the final press “Enter” button, after some instants the solution for your expression will be displayed. Anyone can use this calculator since the syntax used is very similar with scientific handheld calculators, e.g. TI 84-Plus.
A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc. - to be as automatic as possible (i.e. the FusionCatcher will choose automatically the best parameters in order to find candidate fusion genes, e.g. finding automatically the adapters, building the exon-exon junctions automatically based on the length of the input reads, etc.) while providing the best possible detection rate for finding fusion genes.
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators. Repository migrated to: https://github.com/Qucs/ADMS For checkout do: git clone https://github.com/Qucs/ADMS.git
Simple tools for working with gravitational waves
GWtool: simple tools for working with gravitational waves
GPU Machine Learning Library. This library aims to provide machine learning researchers and practitioners with a high performance library by taking advantage of the GPU enormous computational power. The library is developed in C++ and CUDA.
The 3D Toolkit provides algorithms and methods to process 3D point clouds. In includes automatic precise registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc.
multi-trhead workload efficiency test
swet (sustained workload & efficiency test) is a portable benchmark for POSIX and BSD operating systems with multi-thread and multi-process capabilities and flexible, powerful report options.
Automata Based Programming Tool for implementing logic for J2SE, J2EE and Sybmian applications. Consists of Java FSM Framework and Eclipse Plugin parts. Plugin implements UML model editor, visual debugger, validator, compiler and interpreter for Eclipse
INDI astronomical device control library for Java
A Java library implementing the INDI distributed control protocol (http://indilib.org). Designed to easily implement new INDI Clients (graphical and not graphical ones), INDI Drivers and INDI Servers. We have started a complete overall of the project with many more drivers the staging site with the current development state can be found here http://indiforjava.sourceforge.net/stage/
Ctrax is a machine vision program for estimating the positions and orientations of many walking fruit flies, maintaining their individual identities over long periods of time with minimal supervision, and on average for 1.5 fly-hours automatically.
Portable Open Source Intelligence (OSINT) Web Browser
Oryon OSINT Browser is a web browser designed to assist researchers in conducting Open Source Intelligence (OSINT) investigations. Oryon comes with dozens of pre-installed tools and a selected set of links cataloged by category. To safely use all Oryon Browser options, it is recommended that you take the following steps: 1. Check your browser privacy settings. Reset all settings if necessary or make the necessary changes. 2. Disable browsing history (extension: History On / Off) 3. Enable free proxy (extension: Hotspot Shield Free VPN Proxy) 4. Create a dedicated gmail account 5. Create dedicated accounts on Facebook and Twitter 6. Take a look at the collection of links 7. Check out the Oryon Tools bookmarklet 8. Check installed add-ons (extensions: Context, Extension Manager) 9. Save a copy of the QueryTool spreadsheet on your GoogleDrive and check its performance with your cases 10. Log in to the MIIS YouTube channel and watch practical video tutorials.
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder)
Haytham is an open source gaze tracker
Haytham is an open source video based eye tracker suited for head-mounted or remote setups. It provides real-time gaze estimation in the user’s field of view or the computer display by analyzing eye movement. Haytham offers gaze-based interaction with computer screens in fully mobile situations. The software is built by C#, using Emgu and AForge image processing libraries. LICENSE The Haytham is released under a dual license: FREE VERSION: The source code is released under GPL version 3.0. In short, it means that any distributed project that includes or links any portion of Haytham source code has to be released with the source code under a license compatible with GPLv3. COMMERCIAL VERSION: If you want to use the Haytham in a closed source commercial product, you must purchase the license. Please contact the contract adviser at IT University of Copenhagen(firstname.lastname@example.org).
R packages for PK/PD modeling, BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). They include bear, ivivc, PKfit, stab and tdm.
Open source DICOM and RIS/PACS informatics platform
Open source code base for enabling software innovation in imaging. The extensible and robust platform includes viewing, archiving, management, workflow and distribution of images as well as an open architecture for core competency tool development.
QSapecNG is a Qt-based symbolic analysis program for linear analog circuits. In fact, it consists of two indipendently parts: the SapecNG framework engine, and the application gui QSapecNG.
Jadex is a Belief Desire Intention (BDI) reasoning engine that allows for programming intelligent software agents in XML and Java. The resoning engine is very flexible and can be used on-top of different middleware infrastructures such as JADE.
TurnServer is a implementation of Traversal Using Relay around NAT (TURN) protocol. This protocol allows a client to obtain IP addresses and ports from such a relay.
ViTables, a GUI for PyTables
Open source software for processing XTF files
This project was born from a stage at the "Signals and Images Lab (si.isti.cnr.it), Institute of Information Science and Technologies of the National Research Council of Italy". ImageJforXTF extends the open source ImageJ software with functionalities that allow to open and manage XTF files. This kind of files is used to record sonar and bathymetric data. An user can choose to open any file with extension ".xtf" so that the program parses it and shows the resulting image. Then the user can resize the image, apply graphic filters, perform measurements and georeference the recorded data using GoogleMap and GoogleEarth, in addition to using the basic functionality offered by ImageJ.
CUDA-enabled machine learning library for recurrent neural networks
CURRENNT is a machine learning library for Recurrent Neural Networks (RNNs) which uses NVIDIA graphics cards to accelerate the computations. The library implements uni- and bidirectional Long Short-Term Memory (LSTM) architectures and supports deep networks as well as very large data sets that do not fit into main memory.