Open Source Scientific/Engineering Software - Page 44
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Scientific/Engineering Software
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PROS
Custom firmware and IDE for the VEX Cortex Microcontroller
This project has been moved to http://pros.cs.purdue.edu/ PROS is a lightweight and fast alternative operating system for the VEX Cortex Microcontroller. It features multitasking, low-level control, and Wiring compatible functions to harness the full power of the Cortex. With a real-time kernel based on FreeRTOS and a development environment built on Eclipse CDT, PROS uses proven software to increase the reliability and usability of the VEX development system across all three major computing platforms. PROS is currently under active development to make it usable for VEX high school and middle school teams. PROS is intended for advanced VEX users seeking to move beyond competing environments. Eclipse and FreeRTOS have their own licensing agreements. Please see http://www.eclipse.org/legal/epl-v10.html and http://www.freertos.org/a00114.html for details. -
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PlenFrem
Linear static structural analysis of 2D / plane frame and truss
Welcome to PlenFrem, software for performing linear static analysis of 2D frame structures and trusses, suitable for civil/structural and mechanical engineering applications. PlenFrem aims 🎯 to offer a simple application for students 👩🎓, researchers, engineers 👷 whoever need a basic structural analysis software at no cost 🆓. It offers no bloated features, no bells 🔔 & whistles. The interface is intuitive and anyone with fair knowledge of structural analysis 🏗 should be able to use it without spending hours in reading manual 📜. Even if you have access to commercial software 💿, PlenFrem can be used to cross check 🔎 results against other similar applications. PlenFrem is useful for occasional users who do not want subscription based 💸 commercial software. -
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Taverna 1.x (archived)
Scientific workflow system
Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases. See https://taverna.apache.org/download/ for the latest releases from Apache Taverna. -
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galculator
galculator is a scientific calculator in algebraic mode and RPN
galculator is a GTK 2 / GTK 3 based scientific calculator supporting algebraic mode as well as RPN. Features include arithmetic precedence handling, mathematical functions, different number bases (DEC, HEX, BIN, OCT) and angle bases (radiant, degree, and grad). Please note: This project page at sf.net reflects the state of the project up to August 2015. Beginning in September 2015, the project homepage was moved to http://galculator.mnim.org, with the source code repositories and issue trackers hosted at https://github.com/galculator/galculator. -
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open2300 - reads/writes data from the Lacrosse WS2300 family of weather stations. Includes tools that send data to: logfiles, webpages with graphs, XML file, MySQL, Weather Underground, Citizen Weather. Library of 50+ functions for your own programs (C)
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Construct2D
COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils
Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available in version 2.0: hyperbolic grid generation to create higher quality grids in a fraction of the time compared to elliptic grid generation. Elliptic grid generation is still available also. Smooth airfoil surface spacing is handled automatically with user-controlled clustering parameters. Also included is a visualizer written in Python with matplotlib. -
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DockoMatic is a GUI application that is intended to ease and automate the creation and management of AutoDock jobs for high throughput screening of ligand/receptor interactions.
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes. -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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This space is not maintained anymore. If you want to get the latest updates on fpocket refer to https://github.com/Discngine/fpocket. Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
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Free 3D Acropolis is a model 3D in hight resolution of the Acropolis of Athens shortly after its construction.
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Object-oriented crystallographic library and program, for the analysis of Crystal structures from scattering experiments: optimized scattering computation, Graphical interface for structures and data, global optimization algorithms.
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Fuzzy sets for Ada
Fuzzy sets, logic, numbers; intuitionistic fuzzy sets, fuzzy linguis
Fuzzy sets for Ada is a library providing implementations of confidence factors with the operations not, and, or, xor, +, and *, classical fuzzy sets with the set-theoretic operations and the operations of the possibility theory, intuitionistic fuzzy sets with the operations on them, fuzzy logic based on the intuitionistic fuzzy sets and the possibility theory; fuzzy numbers, both integer and floating-point with conventional arithmetical operations, and linguistic variables and sets of linguistic variables with operations on them. String-oriented I/O is supported. A rich set of GTK+ GUI widgets is provided. -
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Kst is the fastest real-time large-dataset viewing and plotting tool available and has basic data analysis functionality. Kst contains many powerful built-in features and is expandable with plugins and extensions.
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MView
Extract and reformat a sequence database search or multiple alignment
NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. Outputs: - HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated). Found a bug? Please open an issue on the MView issue tracker at https://github.com/desmid/mview/issues or send an email to biomview@gmail.com. -
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Mathpaqs
A collection of mathematical packages in pure Ada
Various mathematical packages including algebra, finite elements, random variables, probability dependency models, unlimited integers. Pure Ada, fully portable. More information on... http://mathpaqs.sf.net Alire crate: https://alire.ada.dev/crates/mathpaqs Mirror: https://github.com/zertovitch/mathpaqs -
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GLTF/GLB Windows Shell Extension: This shell extension automatically adds thumbnail images to .glb files in Windows File Explorer and provides a right click menu option to generate a 3D preview image for .gltf files. Supports multi-file select and directory processing. Pre-built Windows x64 installer available at https://buymeacoffee.com/nathancrews/e/255640 LAS/LAZ Pointcloud Windows Shell Extension: This "quick viewer" shell extension provides a Windows File Explorer right click menu option to quickly generate 3D preview images for large and small .las and .laz files. (Disclaimer: Processing time depends on compute hardware) Typical processing time for 100mb .las is about 2 seconds. 25mb .laz file process in about the same times. Files are processed in parallel using available CPU cores. Pre-built Windows x64 installer available at https://buymeacoffee.com/nathancrews/e/255641
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Netkit is a network emulation environment that allows the user to set up complex scenarios on a single PC with little effort and at no cost. In itself, Netkit aims at integrating different other open source products to provide an easy-to-use interface.
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PADIC
A multilingual Parallel Arabic DIalectal Corpus
PADIC (Parallel Arabic DIalectal Corpus) is a multi-dialectal corpus built in the framework of the National Research Project "TORJMAN", led by Scientific and Technical Research Center for the Development of Arabic Language and funded by the Algerian Ministry of Higher Education and Scientific Research. PADIC is composed of 6 dialects: two Algerian dialects (Algiers and Annaba cities), Palestinian, Syrian, Tunisian, Moroccan) and MSA. Mourad Abbas Computational Linguistics Department, crstdla https://sites.google.com/site/mouradabbas9 Publications ----------------- K. Meftouh, S. Harrat, S. Jamoussi, M. Abbas, K. Smaïli, Machine Translation Experiments on PADIC: A Parallel Arabic DIalect Corpus, The 29th Pacific Asia Conference on Language, Information and Computation, PACLIC 2015, Shanghai, 2015. TORJMAN website: ------------------------- https://sites.google.com/site/torjmanepnr/6-corpus -
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Simple Calculator
A simple calculator.
This is a simple calculator written in C++ with the Qt framework, without any extra features. A program for minimalists. -
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A python-based system to diagnosis and make weather maps (wxmap) of numerical weather prediction models using the Grid Analysis and Display System (GrADS) from opengrads.org
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All ZZ/OSS packages, used by <a href="http://www.conesys.net">CONESYS</a>, <a href="http://www.zzoss.com/projects/installer">ZIC</a>.
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haikuVM
A Java VM for ARDUINO and other micros using the leJOS runtime.
HaikuVM has been started for hobbyists who develop applications for ARDUINO to open the world of JAVA and leJOS. Yes, you can program an ARDUINO with JAVA! HaikuVM is so small that it even runs on an atmega8 (and the ASURO robot). And yes, you can program an ASURO robot with JAVA! And since version 1.4.0 the RCX lego brick. -
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A library of C codes for storing and managing nuclear reaction networks, that is, ensembles of nuclear species and reactions among them.
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pyrpl
PyRPL turns your Red Pitaya into a powerful analog feedback device.
The Red Pitaya is a commercial, affordable FPGA board with fast analog inputs and outputs. This makes it useful for quantum optics experiments, in particular as a digital feedback controller for analog systems. Based on the open source software provided by the board manufacturer, PyRPL (Python RedPitaya Lockbox) implements many devices that are needed for optics experiments with the Red Pitaya. PyRPL implements various digital signal processing (DSP) modules (see features below). It allows to arbitrarily interconnect the available DSP modules and retrieve signal values on timescales below 1 ms. The graphical user interface (GUI) provides a realtime display of the various measurement instruments and allows the easy configuration of DSP signal chains and feedback controllers. At the highest abstraction level, arbitrary feedback sequences can be defined to fulfill tasks as complex as approaching and locking a resonance of a high-finesse Fabry-Perot cavity (tested up to finesse=100,000).
