Open Source Scientific/Engineering Software - Page 48
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Scientific/Engineering Software
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A super-duper simple command line calculator that is fast and easy to use. Command Line Calculator supports most common mathematical expressions such as sin, cos, tan, log, exp, random number generation, etc. This contains a list of all functions available (too many): https://www.autoitscript.com/autoit3/docs/functions.htm This contains a list of just the math functions, but the links don't work. Use it to see a smaller list of just math functions and then find the function in the link above: https://www.autoitscript.com/autoit3/docs/functions/Math%20Management.htm
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Easy CNC
Modular CNC software for Arduino controller
The goal of the project is the realization of a modular firmware that allows to control a CNC machine with different utensils. For instance, a CNC with a drill, with few changes can become a plotter with a pen or cutting machine to cut cardboard or stickers. In order to do that, we want project a CNC router with a mechanism that allows a fast utensil change and a controlling firmware which can use different utensils changing some configuration parameters. -
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The Integrating Vision Toolkit (IVT) is a powerful and fast C++ computer vision library with an easy-to-use object-oriented architecture. It offers its own multi-platform GUI toolkit. OpenCV is integrated optionally. Website: http://ivt.sourceforge.net
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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LoFreq
Fast and sensitive variant-calling from sequencing data
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MiModD
Mutation Identification in Model Organism Genomes using Desktop PCs
MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the help of a trained bioinformatician. -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var
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openTCS
open Transportation Control System
openTCS is a platform-independent transportation control system (TCS) intended to manage fleets of automatic guided vehicles (AGVs), but can be used to manage virtually any automatic vehicle. It consists of an abstract kernel that implements replaceable algorithms and strategies (computation of routes, dispatching of orders to vehicles, scheduling of resources etc.), pluggable vehicle drivers that implement communication protocols and a graphical frontend for creating and visualizing logical models of areas the vehicles are moving in. -
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XMD is a program for performing molecular dynamic simulations on metals and some ceramics materials at the atomic scale. It models atomic energies and dynamics using user defined pair potentialsl, EAM potentials and some hard coded potentials.
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yacas
Computer calculations made easy
NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. Yacas is an easy to use, general purpose computer algebra system. It uses its own programming language designed for symbolic as well as arbitrary-precision numerical computations. The system comes with a library of scripts and extensive documentation. Yagy (http://sourceforge.net/p/yagy) provides full yacas experience wrapped in a simple and intuitive graphical interface. -
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Virtual Laboratory Environment
A multi-modeling and simulation environment to study complex systems
VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). The VLE environment provides an IDE to develop C++ models, DEVS coupled models. VLE have also three ports to use the VFL with Python, Java and R programming languages. -
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18F-DOPA & 123I-FP-CIT templates
18F-DOPA & 123I-FP-CIT (Ioflupane - DaTSCAN) human templates for SPM.
The 18F-DOPA and 123I-FP-CIT (Ioflupane - DaTSCAN) templates are intended for use as templates for SPM automated normalisation. Created for SPM8 but SPM12 compatible. Available in NifTI file format. The updated Templates are symmetrical and adjusted to MNI-space templates from 12 (18F-DOPA) and 30 controls without evidence of nigrostriatal degeneration (123I-FP-CIT). Authors: I. Huertas, J.A. Lojo, F.J. García-Gómez & D. García-Solís. Contact: javier191185@gmail.com Terms of use These images are intended for free use by the neuroimaging community. However, we do ask that you please cite the following reference in any publications which make use of these images (previous version): [García-Gómez FJ, García-Solís D, Luis-Simón FJ, Marín-Oyaga VA, Carrillo F, Mir P, Vázquez-Albertino RJ. Elaboration of the SPM template for the standardization of SPECT images with 123I-Ioflupane. Rev Esp Med Nucl Imagen Mol. 2013 Nov-Dec;32(6):350-6.] -
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ANUGA is a software implementation of a hydrodynamic model which is specifically designed to model wetting and drying processes. ANUGA is a joint development project between Geoscience Australia (GA) and the Australian National University (ANU). ANUGA is now being developed on github at https://github.com/anuga-community/anuga_core For information on ANUGA please go to http://anuga.anu.edu.au The ANUGA project is described on http://en.wikipedia.org/wiki/ANUGA_Hydro
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BSPonMPI is an implementation of the BSPlib standard on top of MPI. Both MPI and BSPlib are API's of communication routines meant for parallel computing, but BSPlib is easier to learn and its performance easier to predict.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining. -
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BuddyCAD
A set of freeware applications for viewing/processing P-CAD files.
BuddyCAD Viewer+ can view/process files for following P-CAD versions: - P-CAD v4.5 - P-CAD v8.5 / v8.7 / v9.0 - P-CAD 99 / Accel / 2002 / 2004 / 2006 (through ASCII import) -
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The Camellia library is an open source and cross-platform image processing library, written in plain C. It includes a lot of speed-optimized imaging functions (filtering, morpho, labeling, motion detection, warping, color conversion, project/backproject)
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Camino is a free, open-source software package for simulation, analysis and reconstruction of Diffusion MRI data. Download the latest version of the code by clicking the "Code" tab and then "Download Snapshot". The green download button will get the latest major change (updated less frequently). For tutorials and more information, visit http://camino.org.uk. CAMINO IS A RESEARCH TOOL ONLY AND SHOULD NOT BE USED FOR CLINICAL PURPOSES. In downloading the code you explicitly agree to this condition.
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Code_TYMPAN
Open source software calculating industrial noise in the environment
Code_TYMPAN™ is an open source software for calculating industrial noise in the environment. It allows dealing with 3D realistic geometries and has a convenient Human Machine Interface to help engineers to build 3D models and to achieve analysis needed in environmental noise studies. Code_TYMPAN™ allows developing your own calculation method from basic components and geometrical solvers. It includes a solver based on ISO 9613 extended to industrial applications. In 4.2.x version, a Python API allows advanced users to build and solve models programmatically. By this mean, developers have the capability of building new tools with acoustic features with high productivity. Find useful resources in External Link : - Source Code, - User Documentation, - Developer Documentation, - DefaultSolver Note, - 9613Solver Note. -
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Fuzzy machine learning framework
A library and a GUI front-end for fuzzy machine learning
Fuzzy machine learning framework is a library and a GUI front-end for machine learning using intuitionistic fuzzy data. The approach is based on the intuitionistic fuzzy sets and the possibility theory. Further characteristics are fuzzy features and classes; numeric, enumeration features and features based on linguistic variables; user-defined features; derived and evaluated features; classifiers as features for building hierarchical systems; automatic refinement in case of dependent features; incremental learning; fuzzy control language support; object-oriented software design with extensible objects and automatic garbage collection; generic data base support through ODBC or SQLite; text I/O and HTML output; an advanced graphical user interface based on GTK+; and examples of use. -
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Google Maps
Navigation and transit.
Search for local businesses and services, view maps, and calculate driving directions on Google Maps. Now avaible at Windows app. -
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LCI is an interpreter for the lambda calculus. It supports many advances features like integers, recursion, user defined operators and multiple evaluation strategies.
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MCS is a tool that exploits the Monte Carlo method and, with a complex algorithm based on the PERT (Program Evaluation and Review Technique), it estimates a project's time. MCS is a opensource project and it was devolped by Java Programming Language.
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The Open-source Pseudopotential Interface / Unification Module (OPIUM) allows to generate pseudopotentials in an interactive way, perform ghost checks, Kleinman-Bylander transformation, and output in many different pseudopotential file formats.
