Open Source Scientific/Engineering Software - Page 49
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Scientific/Engineering Software
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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99.99% Uptime for MySQL and PostgreSQL DatabasesCloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.
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OpenVigil
Open pharmacovigilance data extraction, mining and analysis tool
OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm. -
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For the process of RDF dataset transformation the R2R Framework specifies a mapping language and an implementation in form of a a Java API. More infos at: http://www4.wiwiss.fu-berlin.de/bizer/r2r/
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RPNCalc
RPNCalc - The command line Reverse Polish Notation (RPN) Calculator
RPNCalc is the command-line based Reverse Polish Notation (RPN) calculator. RPN calculators make it very simple to do complex calculations, especially if there are parentheses involved. I've created a User Guide (https://frossm.github.io/RPNCalc-UserGuide) to do a better job of explaining how to use RPNCalc than the old readme.md file, which was getting really long. If you have questions, issues, feedback, or ideas, please let me know. You can contact me via the links in the **Introduction** page of the User Guide. ## RPNCalc User Guide: https://frossm.github.io/RPNCalc-UserGuide ## -
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Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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Transistor
Exploiting Mox Software "Bipolar Transistors" database
It requires db.sqlite database and images folder containing transistor's implementation pin Bipolar Transistor Database from Mox Software is not available anymore. As on many download websites it was mentioned as open sources (but no source available) I decided to rebuild if almost from scratch. As a transistor database may be useful i decide to share what I've done. It has been written in Purebasic because IDE is free till 800 lines of code written, and mainly because it's very portable with a lot of library embedded. -
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Truss-101
A desktop application written in Python to solve 2D truss structures.
A desktop application to solve statically determinate and indeterminate 2D truss structures using Matrix Displacement Method (aka Finite Element Method). -
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ViReMa
Viral Recombination Mapper
ViReMa (Viral Recombination Mapper) detects and reports recombination or fusion events in virus genomes using deep sequencing datasets. Feb 2014 - Our paper (Open Access) is available at Nucleic Acids Research: "Discovery of functional genomic motifs in viruses with ViReMa–a Virus Recombination Mapper–for analysis of next-generation sequencing data" http://nar.oxfordjournals.org/content/42/2/e11 This is an on-going project and updates will be regularly posted. Please get in touch with any questions, problems or suggestions. -
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atomes
Analysis, visualization, edition of 3D atomistic models
atomes is a Free (Open Source) cross-platform software licensed under the terms of the Affero GPL v3+ license. atomes is a toolbox developed to analyze, to visualize and to create/edit 3D atomic scale models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le Roux, research engineer for the CNRS Dr. Sébastien Le Roux works at the Institut de Physique et Chimie des Matériaux de Strasbourg. -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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rainbow
short reads clustering and local assembly
Efficient tool for clustering and assembling short reads, especially for RAD. -
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topocad
A set ot tools for surveyors addon to many CAD environments
A set of Lisp tools for surveyors to extend your CAD enviroments. It is compatible with all the autolisp compatible environments It is tested in Windows and Linux. -
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water_hammer_simulation
A Qt application for water hammer simulation.
With differents numerical methods this application simulate the water hammer phenomenon. -
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The project has moved to GitHub: https://github.com/pixmeo/osirix
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Chemical structure sketching tool, for use with various cheminformatics applications. Convenient to use and moderately sophisticated. Suitable for viewing, creating and editing MDL MOL files.
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8 Sounds USB
Summary
XMOS based, USB2 audio card, low power consumption, small form factor, 8 synchronous input channels and 4 stereo output channels. -
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Arduino mySQM Sky Quality Meter
mySQM powered by Arduino Nano
A sky quality meter based on TLS237 and Arduino Nano. (c) Copyright Robert Brown 2014-2024. All Rights Reserved. Code or portions of code may not be copied or used without appropriate credit given to author. For a WiFi ESP32 much improved version please see https://sourceforge.net/projects/mysqmproesp32/ AUTHOR NOTE: HIGHLY RECOMMEND YOU USE AN ARDUINO MEGA FOR THIS PROJECT IF ALL OPTIONS ARE CHOSEN YOU CAN RUN OUT OF CODE SPACE ON A NANO -
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Astronomy Linux 21.04
This is an open project "Astronomy Linux 21.04" for amateurs
This is an open project "Astronomy Linux" for amateurs. Free distributive designed for astronomy amateurs. This image contains different astronomical programs, for example: planetariums, image processing, astro-hardware control, INDI drivers, etc. ********************************************************************************** WARNING! You can install and use this distribution without any guarantees. We are do NOT responsible for the loss of data from your computer during installation of the distribution, as well as during its testing or/and using! ********************************************************************************** ************************* Do you need any help? ************************* 1. Forum https://groups.google.com/forum/#!forum/astronomy-linux 2. New open project “Astronomy Linux” https://www.cloudynights.com/topic/ 3. FB group https://www.facebook.com/astronomylinux/ -
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FOR DETAILED INFORMATION GO TO http://cernrootdebs.sourceforge.net Packages of Cern Root software for Ubuntu/64/32bits. This package is going to be installed on /usr/local. Enabled: minuit2 roofit unuran tmva from 5.34.01 Enabled support for asimage, astiff, builtin_afterimage, builtin_lzma, cintex, explicitlink, fftw3, fitsio, gviz, genvector, krb5, ldap, mathmore, memstat, minuit2, mysql, opengl, python, reflex, roofit, shadowpw, shared, ssl, tmva, unuran, x11, xft, xml.
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Welcome to Clinic MED, an open source application for Professional Clinic Management licensed under GPL Authors Developer: Erick Romero erick@adalid-soft.com Owner: Alexander Amato www.amato.com.br/consultorio-medico/clinic-med
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DDE-BIFTOOL
Bifurcation analysis for delay-differential equations
DDE-BIFTOOL is a set of routines for performing numerical bifurcation analysis of delay-differential equations, running in Matlab or Octave[2]. It was originally created by Koen Engelborghs at KU Leuven (Belgium). [1] Tutorial demo <http://ddebiftool.sourceforge.net/demos/neuron/html/demo1_simple.html> shows the output of an illustrative demo. <http://ddebiftool.sourceforge.net> links to documentation, a list of contributors and current maintainers. The original DDE-BIFTOOL webpage at KU Leuven [1] stores versions up to 3.0 and their documentation. [1] <http://twr.cs.kuleuven.be/research/software/delay/ddebiftool.shtml> [2] <https://www.gnu.org/software/octave> Further tutorials (by M Bosschaert) at <https://sites.google.com/a/uhasselt.be/maikel-bosschaert/home> (pdf files). -
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Emu48 for Mac OS X is an emulator for HP calculators. It is a port of Emu48 for Windows and uses the same ROM images and interface skins. Currently it can emulate the HP49/48/40/39/38 series calculators. More info: http://emu48mac.sourceforge.net/
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FlightAirMap
Flights, vessels, satellites and trackers realtime 2D/3D display
Open source project displaying live aircrafts, ships, satellites or trackers on 2D/3D map. Browse through the data based on a particular aircraft, airline, airport, tracker or vessel to search through the database or see extensive statistics. Can use ADS-B in SBS1 format (dump1090, Radarcape,...), VRS, VA (VATSIM, IVAO whazzup.txt, phpvms,...), ACARS (acarsdec, acarsdeco2), APRS, AIS as datasource. -
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Fractal explorer
Explore fractals with arbitrary precision, compute them over network
Designed for distributed computing over the network -
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JAVA Arabic Stemmer
A JAVA class with a small functionality that is stemming Arabic words
A JAVA Arabic stemmer that is based on Shereen Khoja algorithm. This java class offers a function called stemWrod which takes an arabic word and return the stem of it.
