Open Source Scientific/Engineering Software - Page 43
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Scientific/Engineering Software
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Geo Arbores is a project for developing tools and extensions for the GIS software OpenJUMP
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GeoDMA
Geographic feature extraction and data mining
GeoDMA is a plugin for TerraView software, used for geographical data mining. With a single image, the user can perform segmentation, attributes extraction, normalization and classification. -
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JConvert is a free unit conversion program that has a friendly user interface and can also be used with external applications. Conversions can be modified and/or added easily. Supports multiple languages. Downloads and runs in seconds! Try it now.
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Laboratory Circuit Simulator is transient simulator whiht analog and digital components support for laboratory classes. This support spice netlist files, DSP Tms320f243 DSPemu integration and has high customizable device modules development in c.
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PPMScope
Microcontroller based PC Oscilloscope
PPMScope is a do-it-yourself oscilloscope with an open source design. The intent is that the project can be constructed by an electronics hobbiest using the instructions included. The design is a compromise between features and cost. The bandwidth is lower than a commercial scope, so it's use is limited to signals of 500 kHz and below. It's sample buffer is also smaller than a commercial scope, however sufficient for most oscilloscope functions. This is a version based on the PIC16F877A microcontroller running with a 20MHz clock. The maximum sampling rate is 1 MHz with a 5 Mhz equivalent sampling mode. Currently, the computer interface supports USB, serial, and parallel ports. Good luck on the construction and I hope you enjoy your oscilloscope. I am happy to answer any questions or provide technical support for this design. -
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A software package that implements the probabilistic record linkage technique (PRL). This is a new, improved, open-source, multi-platform version of the previously available program, by the same authors.
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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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TileDownloader
OpenStreetMap tile downloader
A windows program for bulk downloading selections of OpenStreetMap tiles from selected servers. Written in Visual Basic -
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brushless-gimbal-BruGi
Brushless Gimbal Controller for Camera Stabilization
This is a camera stabilization system based on a dedicated controller hardware. The controller software is provided as an Arduino project. A tcl based GUI (graphics user interface) is provided to ease parameter settings and tuning. Brushless Gimbal Controller by Ludwig Färber (Hardware and Software) , Alexander Rehfeldt (Software), Christian Winkler (Software) and Alois Hahn (Software) A good source for instructions and setup issues you find here http://www.itsqv.com/QVW/index.php?title=How_To_-_Martinez_Brushless_Gimbal_Controller_Set-Up rcgroups forum, Martinez board / Open source brushless gimbal HELP THREAD http://www.rcgroups.com/forums/showthread.php?t=1901828 fpv-community forum, Brushless Gimbal Controller - SOFTWARE (german language) http://fpv-community.de/showthread.php?20795-Brushless-Gimbal-Controller-SOFTWARE This project had been migrated from http://code.google.com/p/brushless-gimbal on Jan 10, 2014 -
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erne
ERNE - Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners), -
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miRprimer
Automatic design of primers for miR-specific RT-qPCR
miRprimer designs primers for PCR amplification of microRNAs as described (Busk (2014). A tool for design of primers for microRNA-specific quantitative RT-qPCR. BMC Bioinformatics. 15, 29) for use with the method miR-specific RT-qPCR (Cirera, S., and Busk, P.K. (2014). Quantification of miRNAs by a simple and specific qPCR method. Methods in Molecular Biology. 1182, 73-81.). The program was written in Ruby and is available as source code for developers and as an .exe file for easy use. -
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DWDS/Dialing Concordance
a collection of indexing and search tools for corpus linguists
DWDS/Dialing Concordance (DDC) - a collection of index and search tools for corpus linguists -
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GeoPDEs
A package for Isogeometric Analysis in Octave and Matlab
GeoPDEs is a suite of software tools for research on Isogeometric Analysis of PDEs. GeoPDEs is free software implemented in Octave and fully compatible with Matlab. GeoPDEs is no longer developed at SF, and has moved to GitHub. Please visit http://rafavzqz.github.io/geopdes/ The mailing list will remain active. Releases up to 2.0.4 can be found here. From version 2.1.0 onward, see https://github.com/rafavzqz/geopdes -
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Group Explorer is mathematical visualization software for the abstract algebra classroom. Users can explore dozens of finite groups (and morphisms among them) visually and interactively.
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HaploPainter - a pedigree and haplotypes drawing tool written in Perl/Tk. The software processes pedigree information in standard linkage formats combining haplotype information outputs from Simwalk, Genehunter, Allegro and Merlin.
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JTransforms is the first, open source, multithreaded FFT library written in pure Java. Benchmark results show better performance than FFTW. The latest version is available at http://github.com/wendykierp/JTransforms.
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The Open Modeling Interface and Environment (OpenMI) defines a standardized way to exchange data between computational models that run simultaneously. OpenMI aims to enhance process interaction representation in integrated environmental modelling.
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The Platform Initialization Self-Certification Test(pi-sct) project has source for exercisersizing interfaces in a platform and verifies compatibility to the PI specification with specific tests on PEI and DXE Foundations from PI Spec on UEFI uefi.org.
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QSapecNG is a Qt-based symbolic analysis program for linear analog circuits. In fact, it consists of two indipendently parts: the SapecNG framework engine, and the application gui QSapecNG.
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SENAITE
SENAITE - professional, open source LIMS/LIS software
SENAITE provides professional open source laboratory software for enterprise environments, especially focused to behave with high speed, excellent performance and good stability. -
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Strings Edit
String editing and formatting library for Ada
Strings edit is a library that provides I/O facilities for integers, floating-point numbers, Roman numerals, and strings. Both input and output subroutines support string pointers for consequent stream processing. The output can be aligned in a fixed size field with padding. Numeric input can be checked against expected values range to be either saturated or to raise an exception. For floating-point output either relative or absolute output precision can be specified. UTF-8 encoded strings are supported, including wildcard pattern matching, sets and maps of code points, upper/lowercase, and other Unicode categorizations. -
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traveling-salesman is a GPS -route-planning and -navigation -system based on libosm and the OpenStreetMap.
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mXparser - Math Parser Java C# Library
A flexible mathematical expressions parser for JAVA, Android, C# .NET
mXparser is highly flexible parser of math expressions. Software provides easy to use API for JAVA, Android, C# .NET/MONO (CLS). Main functionalities: - basic operators, i.e.: +, -, *, ^, ! - Boolean logic operators i.e.: or, and, xor - binary relations i.e.: =, <, > - math functions (large library of 1-arg, 2-arg, 3-arg - - functions) i.e.: sin, cos, Stirling numbers, log, inverse functions - constants (large library), i.e.: pi, e, golden ratio - n-args functions i.e.: greatest common divisor - iterated summation and product operators - differentiation and integration High flexibility: - user defined constants and arguments, both free - and dependent on other arguments + possibility of use in functions - user defined functions (both free and depended) - user defined recursive arguments + simple (controlled) recursion (1 recursive argument) - user defined recursive functions / expressions (any) - complex, many arguments, no limitation - internal syntax checkin -
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nccmp
Compare two NetCDF files in-place.
We've moved to Gitlab! (gitlab.com/remikz/nccmp) Compares two NetCDF files in-place to find specific variables, dimensions and/or attributes that differ. Highly recommended for any test-driven environment and regression testing large datasets. -
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slurm-roll
Slurm Resource Manager for Rocks Clusters
Slurm is a replacement for other resource management software and schedulers like gridengine or torque. The slurm roll integrates very well into a rocks clusters installation. In the folder addons, there are a lot of useful rolls for rocks clusters 6.1 and 6.2. These rolls do not depend on slurm. Please see Discussion for further information and support
