Open Source Scientific/Engineering Software - Page 20
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Scientific/Engineering Software
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PyMC
Bayesian Modeling and Probabilistic Programming in Python
PyMC is a Python library for probabilistic programming focused on Bayesian statistical modeling and machine learning. Built on top of computational tools like Aesara and NumPy, PyMC allows users to define models using intuitive syntax and perform inference using MCMC, variational inference, and other advanced algorithms. It’s widely used in scientific research, data science, and decision modeling. -
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STranslate
A ready-to-go translation ocr tool developed with WPF/WPF
STranslate is a lightweight, open-source machine translation front end that lets users translate text between languages using a variety of supported back-end translation engines or APIs, offering a simple GUI for quick translation tasks without needing to write code or use complex web UIs. The application is designed to be small, cross-platform, and flexible, giving users the ability to type or paste text and receive instant translations while optionally selecting the desired language pairs or switching between multiple service providers. By abstracting backend complexity, STranslate makes it easy for both casual users and developers to get translations in local apps, offline modes (where supported), or even integrate translation workflows into larger projects via plugins or scripting hooks. It often includes features like clipboard monitoring, keyboard shortcuts, history tracking, and configurable translation preferences that enhance daily productivity. -
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WS2812FX
WS2812 FX library for Arduino and ESP8266
This library features a variety of blinken effects for the WS2811/WS2812/NeoPixel LEDs. It is meant to be a drop-in replacement for the Adafruit NeoPixel library with additional features. You can search for WS2812FX in the Arduino IDE Library Manager or install the latest (or development) version manually. More complex effects can be created by dividing your string of LEDs into segments (up to ten) and programming each segment independently. Use the segment() function to program each segment's mode, color, speed, and direction (normal or reverse). Note, some effects make use of more than one color (up to three) and are programmed by specifying an array of colors. Random color introduced alternating from start and end of strip. Alternating white/red/black pixels running. Strobe effect with different strobe count and pause, controlled by speed setting. Classic Strobe effect. Cycling through the rainbow. -
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Watchy
An open source E-ink smartwatch
Watchy, an open-source E-Ink smartwatch. Watchy is an E-Paper watch with open-source hardware and software. It has a barebones design utilizing the PCB as the watch body, allowing it to be worn as-is, or further customized with different 3D printed cases and watch straps. It is a unique timepiece that is also a wearable development platform, allowing users to create their own experience. Ultra-low-power e-paper 1.54″ display with 200 x 200 resolution and wide viewing angle. Wi-Fi & Bluetooth LE connectivity. 3-axis accelerometer with gesture detection. Real-time clock for accurate timekeeping with calendar and alarm functions. Built-in USB-to-serial adapter for programming on the go. Watchy comes with comprehensive documentation and Arduino code examples that demonstrate every hardware feature. New watch faces and examples are regularly added. -
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kallisto
Near-optimal RNA-Seq quantification
kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. And since it uses pseudoalignment, it is robust to errors in the reads and preserves the key information needed for quantification. This makes kallisto not only fast but highly accurate as well. In many benchmarks, it even greatly outperforms existing tools. -
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oomwoo
Open-source vacuum robot cleaner
oomwoo is an open-source robot vacuum project designed for people who want to build their own home cleaning robot. It combines Raspberry Pi, ROS2, Home Assistant, 2D LiDAR, ESP32, Arduino, and 3D printing into a community-buildable platform. The project aims to avoid vendor lock-in by keeping the hardware, software, and firmware open. It is designed around local control, with no cloud required for regular operation. The roadmap includes autonomous navigation, mapping, a documented 3D-printable chassis, firmware, motor drivers, sensor electronics, and ROS2 packages. The project is still in an early design and RFC stage, so it is best understood as a build-in-public hardware and robotics initiative rather than a finished consumer product. -
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3DimViewer
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn). -
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GelJ
GelJ is a Java program for the analysis of DNA gel fingerprints images
GelJ is a Java application designed for analysing DNA fingerprint images. GelJ is a feather-weight, user-friendly, open-source and free tool that combines the simple design of free systems with instrumental features for DNA fingerprinting that are only available on commercial tools. Some of the outstanding features of GelJ are functionality for accurate lane- and band-detection, several methods for computing migration models and generating dendrograms, comparison of banding patterns from different experiments, and database support. Citing GelJ: J. Heras, C. Domínguez, E. Mata, and V. Pascual. GelJ – a tool for analyzing DNA fingerprint gel images. BMC Bioinformatics 2015, 16:270 http://doi.org/10.1186/s12859-015-0703-0. You can see more information about GelJ in https://sourceforge.net/p/gelj/wiki/Home/ Several videos explaining the use of GelJ are available in https://sourceforge.net/p/gelj/wiki/Videos/ Please address any question or comment to joheras at gmail.com -
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Geoblock is a program for 3D modeling, database management and visualization of geoscience datasets. It is developed for mineral deposit exploration, ore reserve estimation, mine planning and simulating geotechnical processes in mine sites.
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OpenOrienteering
Former project page
See https://www.openorienteering.org/apps/mapper/ -
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ZedGraph is a class library, user control, and web control for .net, written in C#, for drawing 2D Line, Bar, and Pie Charts. It features full, detailed customization capabilities, but most options have defaults for ease of use.
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EPSILON is a powerful Open Source wavelet image compressor. The project is aimed on parallel and robust image processing.
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Molsketch
2D molecule editor
Molsketch is a 2D molecular editing tool. Its goal is to help you draw molecules quick and easily. Of course you're creation can be exported afterwards in high quality in a number of vector and bitmap formats. -
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A symbolic framework for C++, Python and Octave implementing automatic differentiation by source code transformation in forward and reverse modes on sparse matrix-valued computational graphs.
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OSHMI - Open Substation HMI
SCADA HMI for substations, IoT and automation applications
Now with IEC61850 support! This project combines existing open source projects and tools to create a very capable, mobile and cloud-friendly HMI system that can rival proprietary software. This approach makes it possible to join forces of each project (Chromium, SVG/HTML5, PHP, Lua, SQLite, Inkscape, Lib61850, OpenDNP3, Nginx, Vega, PostgreSQL, Grafana,…) to achieve a great set of open, evergreen, modular and customizable tools for building great HMIs for automation projects. This is not a toy project! It's been actually used in dozens of substations up to 230kV level and also in control centers with configurations up to 70.000 tags. Feel free to ask questions in the "Discussion" section. Help sponsoring OSHMI here https://github.com/sponsors/riclolsen. >>> Have a look also at my new SCADA project here: https://github.com/riclolsen/json-scada -
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The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. The main home page of the CDK is now at: http://cdk.github.io
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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XCSoar
... the open-source glide computer
XCSoar is a tactical glide computer for Android, Linux, macOS, and Windows. -
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MOEA Framework
A Free and Open Source Java Framework for Multiobjective Optimization
The MOEA Framework is a free and open source Java library for developing and experimenting with multiobjective evolutionary algorithms (MOEAs) and other general-purpose multiobjective optimization algorithms. The MOEA Framework supports genetic algorithms, differential evolution, particle swarm optimization, genetic programming, grammatical evolution, and more. A number of algorithms are provided out-of-the-box, including NSGA-II, NSGA-III, ε-MOEA, GDE3 and MOEA/D. In addition, the MOEA Framework provides the tools necessary to rapidly design, develop, execute and statistically test optimization algorithms. -
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Vital Sign Simulator
Patient vital sign simulator for medical emergency training purposes
The vital sign simulator simulates a patient monitor and is intended for use in medical emergency training simulations. In combination with a (cheap) cpr-manikin, it offers a low-cost alternative to commercial high-tech patient simulation manikins. It is used with a dual monitor system, one monitor with controls for the operator and one providing the vital signs to the trainees. Heart rate, oxygen saturation, etCO2, respiratory rate, blood pressure and various moving ecg-samples can be set and changed at any time by the operator. The trainee-side interface allows automatic/manual defibrillation, cardioversion and pacing. -
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virtualplanet
Software for planet observation and study
Allow you to visualize any planet aspect at any time. Include extended feature database and texture. Many function are oriented to the observation at the telescope and other to indoor research . -
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
Priorty Estimation Tool (PriEsT) is a decision analysis tool. You can use it for ranking the options you have, or alternatively, you may use it for resource allocation (budgeting) problems. In PriEsT, you enter a list of available options and then define your criteria for prioritization. After defining criteria, PriEsT allows you to enter your judgements against each criterion, which are then used to calculate the final ranking (or weights). Please cite this if you find it useful:- Siraj, S., Mikhailov, L. and Keane, J. A. (2015), "PriEsT: an interactive decision support tool to estimate priorities from pairwise comparison judgments". International Transactions in Operational Research. 22: 217–235. doi:10.1111/itor.12054 -
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Bluetooth GPS for Android
An application for using an external bluetooth GPS on Android devices
An application for using an external bluetooth GPS on Android devices. The application connects to a Bluetooth device (NMEA GPS) and creates a GPS provider which can be used to replace the internal GPS. -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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Test, validate and diagnose communication protocols in medical environments (DICOM, HL7 and IHE). DVTk is a must have for software developers, test engineers and service engineers that work in the healthcare domain. NEW. Services on www.dvtk.org!
