Open Source Scientific/Engineering Software - Page 31
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Scientific/Engineering Software
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Build Data Resilience - Take the Assessment TodayIs your recovery strategy as strong as you think? Take this quick self-assessment to check your recovery readiness and gain tailored insights. In only 2 minutes, you'll learn where you fall on the recovery readiness scale.
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Quick DICOM Tag Editor
View and edit DICOM tags (Windows & Mac & Linux)
* General description - View and modify DICOM tags of a single file - View and modify DICOM tags from multiple files - Dump DICOM tags into a text file - Preview images (DICOM pixel data) * Update history - All update history list have been moved to the Wiki page -
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aramultiomics
A toolkit for studying protein-protein/nucleic acid interaction
araMultiOmics consisted of seven modules where each module was created based on existing databases and software for studying protein binding sites/open chromatin regions, DNA-TF bonding profile, etc -
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openPOWERLINK
An Open Source POWERLINK Stack
openPOWERLINK is an Open Source Industrial Ethernet stack for communication in hard real-time. It can be operated as both, Managing Node (master) and Controlled Node (slave). With version 2.0, the source code has been cleanly split into an application-oriented user library and a time-critical stack driver. The latter may be moved to a dedicated communication processor or into a kernel module to deliver enhanced performance while still keeping the API in user space. A full documentation of the stack is available on the web site: http://openpowerlink.sourceforge.net The following page can be used to report a security vulnerability: https://sourceforge.net/p/openpowerlink/discussion/ -
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CompPad is a LibreOffice extension that provides live mathematical and engineering calculations within a Writer document. It is intended to provide a free / open-source alternative to Mathcad .
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Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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DataMelt
Computation and Visualization environment
DataMelt (or "DMelt") is an environment for numeric computation, data analysis, computational statistics, and data visualization. This Java multiplatform program is integrated with several scripting languages such as Jython (Python), Groovy, JRuby, BeanShell. DMelt can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Neural networks and various data-manipulation methods are integrated using powerful Java API. Elements of symbolic computations using Octave/Matlab scripting are supported. -
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GroIMP
Growth-grammar related Interactive Modelling Platform
Important: Groimp migrates to Gitlab. You can find the latest code at "https://gitlab.com/grogra/groimp/". The version on Sourceforge will not be updated anymore. The modelling platform GroIMP is designed as an integrated platform which incorporates modelling, visualisation and interaction. It exhibits several features which makes itself suitable for the field of biological or ALife modelling: The “modelling backbone” consists in the language XL. It is fully integrated, e.g., the user can interactively select the rules to be applied. GroIMP provides classes that can be used in modelling: Turtle commands, further geometrical classes like bicubic surfaces, the class Cell which has been used in the Game Of Life implementation, and so on. The outcome of a model is visualised within GroIMP. In the visual representation of the model output, users can i -
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XL Toolbox
Data analysis and visualization for Excel, for free
XL Toolbox is a free Excel statistics addin that helps analyzing and presenting data: Smart custom error bars, chart design, chart export to TIFF; formula builder, transpose wizard, analysis of variance (ANOVA); automatic backups, workbook management and more. -
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open enventory
Electronic Laboratory Notebook, chemical inventory & more
Web-based Electronic Laboratory Notebook (ELN) with integrated Chemical Inventory by the group of Prof. Goossen (then TU Kaiserslautern, Germany), based on PHP 8+/MariaDB. Allows (sub-)structure search, reaction planning, management of spectra and literature. -
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HYPE
hydrological model for simulation of water and water quality over time
Please go to project home (https://hypeweb.smhi.se/model-water/) or wiki-pages (http://hype.smhi.net/wiki/doku.php?id=start) for more information. The hydrological model HYPE is developed at the Swedish Meteorological and Hydrological Institute (SMHI). The model simulates water, nutrients and other substances in small and large river catchments. Included in the project is HYSS, which is needed to run the model. It handles input and output and the simuation over time. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
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AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
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Discontinuity Set Extractor (DSE) is programmed by Adrián Riquelme for testing part of his PdD studies. Its aim is to extract discontinuity sets from a rock mass. The input data is a 3D point cloud, which can be acquired by means of a 3D laser scanner (LiDAR or TLS), digital photogrammetry techniques (such as SfM) or synthetic data. It applies a proposed methodology to semi-automatically identify points members of an unorganised 3D point cloud that are arranged in 3D space by planes.
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EtherCAT Explorer
Graphical explorer for EtherCAT network
Small EtherCAT graphical Explorer in C#. Show cyclical data Allows read/write acyclic SDO Allows EEPROM read out Read slave description from it's XML file Can control the slaves state Full open source code with 2 simples master code for C# developpers. Full Java sample code for developpers. Base on Soem lib (GitHub). Npcap (with Wireshark maybe) should be installed before in Winpcap compatible mode : don't miss the check box ! EtherCAT™ is a registered trademark of Beckhoff Automation GmbH. -
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FreeEOS is a Fortran library for calculating the equation of state using an efficient free-energy minimization technique that is suitable for physical conditions in stellar interiors.
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Lithology Docker for CorelDraw
For the design of geological sections, illustrations
Telegram chat https://t.me/+cDV5ccIDOJ42OTc6 Telegram group https://t.me/+qvT9A2fX5-c5YWMy YouTube channel https://www.youtube.com/@finich1981 Lithology is a docker for CorelDRAW, which is designed to build geological sections, geological maps, and well mapping schemes. Installation You can use the installer, which is located in the setup folder Or install it manually from the archive in the zip folder There are two folders in the archive Lithology and LithologyResources Copy the Lithology folder to c:\Program Files\Corel\CorelDRAW Graphics Suite XXXX\Programs64\Addons\ Copy the LithologyResources folder to c:\Users \{Your user}\AppData\Roaming\Corel\CorelDRAW Graphics Suite XXXX\Custom Data\ Launch CorelDRAW, open docker from the menu Window-> Windows settings-> Lithology -
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ASCOM driver for the LittleFoot Elegance Photo (LFEP) telescope controller. Firmware 6.x is fully supported - firmware 5.x is partially supported (all LFEP features are available but configuration is only possible by handbox). Contains drivers for telescope, focuser, camera, filter wheel, roof controller and dew heater which shares a single connection to the controller.
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The most recent distribution of MyOpenLab can be downloaded from: myopenlab.org Follow us on Facebook as MyOpenLab Colombia https://www.facebook.com/myopenlabcolombia/ Subscribe, like and watch our MyOpenLab videos: https://www.youtube.com/channel/UCet6UPnaHKGjtbytJHIf2jQ Thanks!
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Open3DQSAR is a free, open-source tool written in C aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs).
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xfemm
Cross platform electromagnetics finite element analyisis based on FEMM
Cross platform electromagnetics finite element analysis code, with very tight integration with Matlab/Octave. Development of xfemm now takes place on Github here: https://github.com/REOptimize-Systems/xfemm xfemm is a refactoring of the core algorithms of the popular Windows-only FEMM (Finite Element Method Magnetics, www.femm.info) to use only the standard template library and therefore be cross-platform. The codes can be used as a library, standalone executables, or through the advanced Matlab/Octave interface, which uses direct data exchange at the memory level rather than the original FEMM ActiveX or file-based interface, for much improved communication speed. If you use xfemm, particularly for industrial work, but also academic, it will be greatly appreciated if you could write an email stating this and how it has supported your work. This is a low-cost way to ensure further development and maintenance will continue! -
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Arduino MIDI Library
MIDI for Arduino
This library adds MIDI I/O communications to an Arduino board. MIDI over USB, Bluetooth, IP & AppleMIDI (see Transports). Active Sensing support. Compatible with all Arduino boards (and clones with an AVR processor). Simple and fast way to send and receive every kind of MIDI message (including all System messages, SysEx, Clock, etc..). OMNI input reading (read all channels). Software Thru, with message filtering. Callbacks to handle input messages more easily. Last received message is saved until a new one arrives. Overridable template-based settings. Create more than one MIDI interface for mergers/splitters applications. Use any serial port, hardware or software. All USB-related code has been moved into a separate repository Arduino-USB-MIDI, USB MIDI Device support with MIDI USB, still using this library to do all the MIDI heavy-lifting. -
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BasicBSpline.jl
Basic (mathematical) operations for B-spline functions
Basic (mathematical) operations for B-spline functions and related things with Julia. -
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Bowtie 2
A fast and sensitive gapped read aligner
Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. Bowtie 2 outputs alignments in SAM format and includes companion utilities for building and inspecting indexes. It is widely used in bioinformatics pipelines for RNA-seq, DNA-seq, metagenomics, variant analysis, and other sequencing-based research tasks. Overall, Bowtie 2 remains a foundational command-line tool for high-throughput sequence alignment and reproducible computational biology workflows. -
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CMSSW
CMS Offline Software
CMSSW is a collection of software used wherever CMS is needed. CMS is a particle detector that is designed to see a wide range of particles and phenomena produced in high-energy collisions in the LHC. CMSSW has one executable, cmsRun and many plug-in modules. -
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CUTLASS
CUDA Templates for Linear Algebra Subroutines
CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. These thread-wide, warp-wide, block-wide, and device-wide primitives can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications. To support a wide variety of applications, CUTLASS provides extensive support for mixed-precision computations, providing specialized data-movement and multiply-accumulate abstractions for half-precision floating point (FP16), BFloat16 (BF16), Tensor Float 32 (TF32), etc. -
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Dagger.jl
A framework for out-of-core and parallel execution
Dagger.jl is a framework for out-of-core and parallel computing in Julia that allows users to construct and execute dynamic task graphs. It is designed for large-scale, distributed, and memory-efficient computations. Dagger supports lazy evaluation and scheduling across multiple threads or machines, enabling high-performance workflows for data processing, scientific computing, and machine learning.
