Open Source Python Scientific/Engineering Software - Page 40

A cross-platform library that computes fast and accurate SIFT image features. libsiftfast provides Octave/Matlab scripts, a command line interface, and a python interface (siftfastpy). Optimized with SIMD instructions and OpenMP .

This is a Python-based efficient implementation of several semantic similarity measures. The target is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology (GO).

FastVersion is a Qgis plugin for data versioning in a Postgis database. This plugin provides data versioning to tables with geometry stored in postgis. It allows to create, changes and eliminate versions, and within each version , to insert, modify and eliminate elements. It is possible carry out the processes of “post” from one version to another, with conflict resolution functionality. The system uses algorithms and data structures so that information is not duplicated each time a version is created. We recommend downloading it from the Qgis app. Plugins->Manage and Install Plugins->Settings->Show also experimental plugins Plugins->Manage and Install Plugins->Search FastVersion If downloaded from sourceforge, it must be unzipped in \.qgis2\python\plugins

Fastq-Fasta Converter is a desktop application that converts Fastq files into Fasta files.

A database and a web front end for physiologic data on animal feeding, developed with PostgreSQL and Django at NESCent (http://www.nescent.org) for Mammalian Feeding Working Group (http://www.feedexp.org). Current development of the codebase is on Github at http://github.com/NESCent/feedingdb.

An object-oriented partial differential equation (PDE) solver, written in Python, based on a standard finite volume approach and includes interface tracking algorithms. *WARNING* The project is no longer using Sourceforge to maintain its repository.

Fielddata Mgr Overview This is a Python program, which means that one must install the open source freely available Python interpreter and a few required also open source, freely available modules that support the functionality of the program. The program "Fielddata Mgr", is customized for the Rick survey department, in such that it supports up to 9 chiefs, each having their own folder in one location, 2 supervisers, each with a PC on the network, and access to a main server. Each day, the .RAW file is copied to the appropriate chiefs folder and when Fielddata Mgr is run, or the reload button is clicked, all .RAW files are listed along with a long list of all job folders existing in a designated location, and a short list of frequently accessed jobs that are selected from within the long list. When a .RAW file is selected, the contents are read, interpreted, and the results displayed within the program window. For remaining information please read the info sht.

DTMF detector library and/or application that reads in the specified audio file and returns/outputs whether DTMF detected and/or list of detected digits. May have GUI and command line interfaces.

FillWorks is python based standalone scientific tool for cut and fill bidimensional studies over terrain profiles. You'll be able to plan a train or road line and get the visual output on it. Complete, with user guide.

This is Python based program for analysis of radiochromic films. Similar to filmQAPro, but free. It can be used to study Gafchromic EBTX films.

FineSplice is a Python wrapper to TopHat2 geared towards a reliable identification of expressed exon junctions from RNA-Seq data, at enhanced detection precision with small loss in sensitivity. Following alignment with TopHat2 using known transcript annotations, FineSplice takes as input the resulting BAM file and outputs a confident set of expressed splice junctions with the corresponding read counts. Potential false positives arising from spurious alignments are filtered out via a semi-supervised anomaly detection strategy based on logistic regression. Multiple mapping reads with a unique location after filtering are rescued and reallocated to the most reliable candidate location. FineSplice requires Python 2.x (>= 2.6) with the following modules installed: pysam (http://code.google.com/p/pysam/) and scikit-learn (http://scikit-learn.org/). For further details check out our publication: Nucl. Acids Res. (2014) doi: 10.1093/nar/gku166

[NOTICE!] FingerID since version 1.4 will be hosted on github: https://github.com/icdishb/fingerid A metabolite identification software using tandem mass spectrometry and kernel methods. The related paper can be found at http://bioinformatics.oxfordjournals.org/content/early/2012/07/18/bioinformatics.bts437.abstract. Now it supports unix/linux like system.

Software to let Finn control a computer

Tim Peters' FixedPoint.py + Write docs for the Library Reference manual. I expect the existing module docstring will be a good start. + Create a test driver for Python's regression suite. + Have fun modernizing it, if you like (for example,

The Flamenco search and browse interface framework uses hierarchical faceted metadata to allow users to both refine and expand queries, while maintaining a consistent representation of a collection and seamlessly integrating keyword queries.

FlexGrePPS forms the foundation of a novel antigenic screening methodology that is based on the representation of an entire proteome by near-optimal degenerate peptide pools.

This is an application for creating alarms and PLC tags for Wincc Flexible (Siemens HMI Software) from one or several Data Blocks (DB) of the Simatic Manager. The application creates two files that can be imported in Wincc Flexible.

Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering) methods. The project targets both users and developers.

Fluid2D allows to study a wide variety of 2D flows. It is written entirely in Python. It is both a teaching code and a research code, capable of running from one core to thousands. Its numerics has been chosen to yield to as small dissipation as possible allowing to simulate easily high Reynolds flows, much higher than any of its concurrents. High performances are achieved by writting most of the operations as matrix-vector multiplications, handled by numpy that itself relies on the highly optimized BLAS.

FoamBlade provides a complete toolchain for hotwire foam-cutting. FoamBlade currently supports 4-axis hot-wire foamcutting machines that are connected to the parallel port. Generating cut-files from special built DXF-Files is also possible.

This is the first force-matching software published with the ability to do general coarse-graining for molecular systems.

Meteorologists use the FPA to create a series of weather charts, known as depictions, that show weather fields over a sequence of times. The weather fields can contain grid point data or sets of areas, lines or scattered points. The weather depictions are not just graphical displays, but windows into an object database. By connecting processes to the database, forecast offices can automatically generate forecast products or run local models, while spending more of their time on weather analysis, diagnosis and prognosis.

Source code is available on https://github.com/MarkoLeskovar/FractalRenderingApp

FreePM is an opensource physicians practice management / electronic medical record application. The company providing support for FreePM nolonger exists. You may consider TORCH http://sourceforge.net/projects/op-torch/ or one of the other FOSS EMR's.