Open Source Python Scientific/Engineering Software - Page 38

Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics and size, and output the results. Quantal analysis : This part of the package performs simple variance-mean analysis and Bayesian quantal analysis to estimate the quantal sizea dn number of release sites among other measures.

Basic and intermediate examples to read, modify and write DICOM files with Python code using Jupyter - To install Jupyter - https://jupyter.org/install ====== All examples are based on Pydicom. An open source library - https://pydicom.github.io/

This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress

A Python module to seamlessly interact with the Velleman K8055 kit via the K8055D.dll for Windows using Python ctypes

UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An unlikely-to-be-the-most-parsimonious tree is printed upon completion in basic Newick tree format. As all parts of the program are the original work of a beginner programmer, this may represent one of the worst approaches to solving the phylogenetic problem. I have clearly avoided object-oriented programming. Nevertheless, I distribute this imagining it might someday be slightly educational or at least provide a laugh at the pathetic attempt it makes to reinvent the wheel

Pysolar is a Python library for calculating the position of the sun relative to the earth as a function of latitude, longitude, and time. There is also code included for other problems related to the development of photovoltaic systems. Still in alpha.

Functions to convert to and from decimal to Canonical Signed Digit representation. Handles fractional numbers. Useful for multiplierless hardware blocks on ASICs, FPGAs etc.

Python Champollion Electronic utilities

The Python Genetic Programming Project implements a Genetic Programming System a la J Koza in Python.

Pyfort is a tool for creating extensions to the Python language with Fortran routines. It supports F77-interfaced routines now, with plans for supporting more of F90 later.

QGis Python Plugin to create named map themes to switch the visibility of all layers belonging to theme. Experimental working prototype with functionality to include in future version of QGIS.

Graph-based Extraction and Summarization - a generic graph-based summarization framework. Basic functionality is provided - third-party modules can be plugged in.

Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps.

RASP uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy. This enables rapid determination of highly accurate assignments on the basis of minimal experimental datasets, even for spectroscopically challenging proteins. RASP takes as input spin systems assembled on the basis of an arbitrary set of conventional triple-resonance NMR experiments. Uniquely, RASP is capable of extensive assignments even in the abscence of Cbeta chemical shift information: over a test set of 154 proteins RASP assigns 88 % of residues with an accuracy of 99.7 %, using only information available from HNCO and HNCA spectra. RASP is described here: MacRaild and Norton (2014) RASP: Rapid and robust backbone chemical shift assignments from protein structure. J Biomol NMR doi:10.1007/s10858-014-9813-7

SAT solvers are being used more and more in partial key exposure attacks. The scope of this script is to show that SAT solvers can be used in partial key exposure attacks of RSA with very good results.

RTS2 is project to create an open source environment for control of a fully autonomous observatory. It is running about dozen fully autonomous observatories. Its modular design allow easily addition of new devices (to already huge supported HW list).

Moved to GitHub in 2013. This SourceForge project is no longer updated. Source code and documentation: stokes: https://github.com/kichiki/stokes libstokes: https://github.com/kichiki/libstokes libiter: https://github.com/kichiki/libiter twobody: https://github.com/kichiki/twobody RYUON User's Manual: https://github.com/kichiki/RYUON-manual RYUON : many-particle simulation suite

Remote Robot monitor is a wxPython-based interface for controlling and monitoring mobile robots designed to take part to the Eurobot 2009 contest. Provides and interface to exchange data with the DIIT TEAM (http://eurobot.diit.unict.it) Erlang-developed

ResearchMaster is a tool that you can trust to help with organization, multitasking, and research. ResearchMaster provides a place to capture your fleeting thoughts and ideas, and it allows you to hit-the-ground-running on projects.

Explore InSAR data and more

A Signal Acquisition, Visualization & Analysis software application: * Signals, as in analog sensor data * Acquisition, as in data sampling/capturing/recording * Visualization, as in plotting raw/processed data * Analysis, as in live/post data processing Capabilities: The software has build in support for National Instruments Daq equipment (NI-DAQ) or it can load external source scripts (python), for customizable data sources. Supports data exporting/importing to multiple file formats (H5, CSV, Matlab, txt) Raw and analyzed data can be visualized and inspected in real-time or via playback. Most traditional signal processing methods are available, such as trending (Mean, Peak, Min/Max, RMS, Variance, Kurtosis, Skew, MAD) and frequency domain analysis (FFT, FRF, Order Spectrum). For machinery/rotor dynamics impact testing, tacho, order tracking, order spectra, waterfall plots, orbit plots and bode plots are supported.

ScardFace is a python3k library for interfacing with smart cards, which supports Plug-and-Play readers inclusion and threading. It also offers classes for manipulating APDU cmds and resps, and use them in a transport-protocol-independent fashion.

SDF Merger is a Python-based desktop application designed for chemists and researchers working with molecular data. The tool provides an graphical interface to merge multiple SDF files containing chemical structures and properties into a single consolidated file. Key Features: 1. User-Friendly GUI: Clean, professional interface with corporate branding 2. Batch Processing: Automatically finds and merges all SDF files in a selected folder 3. Real-time Progress Tracking: Visual progress bar and status updates during merging Technical Specifications: 1. Language: Python 3 2. GUI Framework: Tkinter 3. Chemistry Library: RDKit for chemical data processing 4. File Formats: Input/Output in SDF format Citation Md. Ismiel Hossen, A. (2026). SDF Merger: A Desktop and Web Tool for Merging Chemical Structure Data Files (v1.1). Zenodo. https://doi.org/10.5281/zenodo.18291398

python, SExtractor. A python module to read, write and manage SExtractor catalogs.

Space Time Analysis of Regional Systems: Combines a suite of geocomputational and dynamic visualization modules for the exploratory analysis of data measured for spatial and temporal units.