Open Source Python Scientific/Engineering Software - Page 38

Interfacing GMP 4 to Python 2.{3,4} for fast, unbound-precision computations.

We aim to develop a transformative computational method for automatic discovery of a set of dynamical rules that best captures both state transition and topological transformation in the data of spatio-temporal evolution of a complex network.

Solving genetic algorithms in a distributed processing system. Developed in python with sockets.

Because GAjoe of ATSAS cannot deal with WAXS range, and no parameters can be modified. I made a code by myself to use GA for finding best EOM for SAXS/WAXS. The project need ATSAS crysol and a folder with multiple pdb files to use.

Genetic data converter, for hapmap.org and hapmixmap data formats. Reads data in tabular format and writes in hapmixmap format. It's possible to add extensions to output different data formats.

A small simulator for Mendelian genetics, genetic drift, natural selection and random mutations, built on matplotlib and wxpython. A graph will be generated that traces the distribution of genotypes at successive generations.

BiSA is a bioinformatics database resource that allows investigators to run a number of overlapping genomic region analyses using their own datasets, or against the pre-loaded Knowledge Base. Analysis results can be restricted to a chromosome; the minimum base pair overlap in two sets or maximum distance between regions can be set; as can the maximum allowed distance between region centres. BiSA is capable of reporting overlapping regions that share common base pairs; regions that are nearby; regions that are not overlapping; average region sizes. BiSA can also annotate binding regions of interest with nearby genes. The results of overlap analysis can be imported into the Knowledge Base, allowing them to go into downstream analysis and independent annotation. A Venn diagram tool is also integrated into the software to allow users to visualize overlap results.

The Geocanvas project aims to provide a very small and simple set of APIs to assist the developer in creating geographically referenced canvas applications within the GTK/Gnome environment.

Graphical tool for managing database of geocaches and waypoints, importing GPX files and exporting geocaches to many formats including GPX, POI, HTML and others.

GeoSolver is a Python library for solving geometric constraint problems. A graphical testing and demostration application, the Geometric Constraint Workbench is included with the software.

Geomatrix, collection of C/C++ libraries to be used for symbolic description of n-dimensional geometric models. Operates internally with a representation that constructs complex objects based on primitives, allowing loss-less modifcation of models.

This project examines techniques to model three-dimensional rigid body motion using the geometric algebra of Dual Quaternions and how such models compare to more traditional models when used in underconstrained filtering applications.

Geometry Amateur, mechanical geometry prover

Geotag Merge is designed to combine track data from a GPS unit with EXIF data in a series of photographs. A handheld GPS can be simply carried while taking photos, and the photos can later be automatically gettagged (by matching timestamps).

GerbTool is a set of tools for modifying gerber and excellon drill files. GerbTool can be used to tile multiple gerber files as a single job, and can be run interactively or in batch mode.

Glimmer is an open source (GPL) three-dimensional thermomechanical ice sheet model, designed to be interfaced to a range of global climate models.

Global Village is a UI for xplanet on the Gnome desktop

GmshMorph is a tool to be used with GMSH, the meshing program by Christophe Geuzaine and Jean-François Remacle, for oceanographic and land-based fluid dynamics modelling. The program shapes meshes produced by GMSH to fit specified contour data.

Data processing algorithms based on the gnostical theory of uncertain data possess high robustness with respect to both outlying data and changes of their statistical characteristics.

This project has been moved to Github, Look there instead

A gnome mathematical GUI designed to be a central tool where you can launch various other existing mathematical tools. It now supports Numerical Python Session, and more soon.

Veterinary Practice Management program for management, documentation, accounting etc. in the veterinary practice. Easy to use, intuitive structure. python + PyQt4, postgres database as storage engine. PRE-ALPHA!

Gnuplot is a widely known script based free plotting program. This script (gpt2pdf) makes it possible to generate pdf figures with 2D LaTeX maths on top of it by including psfrag replacements directly as comments in the gnuplot file. The resulting pdf file doesn't contain any extra white-spaces around it and as such can be comfortably included in any (pdf)LaTeX file. Requires: Python 2.4 - 2.7, LaTeX and the system commands ps2epsi and epstopdf which comes in with any ghostscript installation. Dr. Shibaji Banerjee Department of Physics St. Xavier's College, Kolkata Included: Main file: gpt2pdf.py demo file: demo.plt demo file; K.plt and K.txt Usage: gpt2pdf demo gpt2pdf K The script is written in pure python. It is easy enough for customization.

This object-oriented python module converts 3D VRML models into Collada and integrates it in Google Earth (GE) through the Keyhole Markup Language (KML). It enables the visualisation of large scale aerial/satellite images in the Geo Browser.

GpxBase - simple GPS data manipulation Copy/Move/Delete/Update Waypoints/Tracks/Routes within a list of GPX/KML files. Open source solution to keep track of personal GEO Data Base from different sources (GPS devices, Google software and other).