Open Source Python Scientific/Engineering Software - Page 41

Fluid2D allows to study a wide variety of 2D flows. It is written entirely in Python. It is both a teaching code and a research code, capable of running from one core to thousands. Its numerics has been chosen to yield to as small dissipation as possible allowing to simulate easily high Reynolds flows, much higher than any of its concurrents. High performances are achieved by writting most of the operations as matrix-vector multiplications, handled by numpy that itself relies on the highly optimized BLAS.

FoamBlade provides a complete toolchain for hotwire foam-cutting. FoamBlade currently supports 4-axis hot-wire foamcutting machines that are connected to the parallel port. Generating cut-files from special built DXF-Files is also possible.

This is the first force-matching software published with the ability to do general coarse-graining for molecular systems.

Meteorologists use the FPA to create a series of weather charts, known as depictions, that show weather fields over a sequence of times. The weather fields can contain grid point data or sets of areas, lines or scattered points. The weather depictions are not just graphical displays, but windows into an object database. By connecting processes to the database, forecast offices can automatically generate forecast products or run local models, while spending more of their time on weather analysis, diagnosis and prognosis.

Fosite is a generic framework for the numerical solution of hyperbolic conservation laws in generalized orthogonal coordinates. Its main purpose is the simulation of compressible flows in accretion disks. The underlying numerical solution method belongs to the family of unsplit conservative finite volume TVD schemes. The method is 2nd order accurate in space and uses high order Runge-Kutta and multistep schemes for time evolution. In addition to the pure advection code several source terms have been implemented including viscous diffusion and gravitational acceleration. Fosite is written with object-oriented patterns in Fortran 2003 and follows the Structure of Arrays (SoA) layout, operating on generic field datatypes. This allows for high performance on modern architectures (SIMD). It is parallelized and vectorized. The software is thereby optimized for the NEC SX-Aurora TSUBASA Vector Engine .

FreePM is an opensource physicians practice management / electronic medical record application. The company providing support for FreePM nolonger exists. You may consider TORCH http://sourceforge.net/projects/op-torch/ or one of the other FOSS EMR's.

FreeBrain will be an application for the analysis of 2D neurophysiological signals, like heart-rate, EEG or eyemovements. It is aimed at those who want intuitive or free software and those who want a customizeble tool that can handle mixed datasets.

FreeCeilo is an interface for ceilometer CL31.A shell script is used for collecting data from the ceilometer and freeceilo is used for plotting the data.Tested and developed in SPACE ,Trivandrum

FreeCeilo is an interface for Ceilometer CL-31.It works in offline mode. It plots backscatter intensity, cloud base graph and surface plot.It was tested and developed at SPACE, Thiruvananthapuram, and is implemented in CESS.

Freeode is a compiler for the SIML programming language. It is a specialized language to solve differential equations. The compiler creates a python program that uses Numpy and Scipy to do the numerical computations.

Infrared frequency scaling of MOPAC2009 .aux files.

Frowns is a chemoinformatics system written almost entirely in python.

Calculate some BASIC mathematical function You can browse the source at: https://github.com/TheNiceGuy/FunctionCalculator

This software implements the equations of the catenary curves, in adimensional formulation. The theory is applicable only to elastic ropes with uniform section. Any number of hanged masses or hangers may be input. The schema may be imported and exported. The graphics of deflections and tensions are shown with reference to X coordinate, while the graphic of stretches is shown with reference to the curvilinear coordinate. The solution is found by iteration, by mean of Scipy Minimize functions of Python, version 1.10. The results may be exported to .csv or .txt files. Gui is provided with tkinter windows.

ein kleines Programm um bestehende CNC Programmteile zu modifizieren. z.b. invertieren einer CNC Achse oder das verschieben einer CNC Achse Manipulation CNC Programm snipe

GAI is a graphical GIS based front end to ANUGA which allows convenient and visual tools for setting up hydrodynamic models. GAI depends on ANUGA to run the models created by GAI.

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. You can find the accompanying paper here: http://nar.oxfordjournals.org/content/41/1/e10.short Thanks to the great work of the SeqAn team, you can now use GASiC as a Knime workflow: https://github.com/seqan/knime_seqan_workflows/tree/master/metagenomics_gasic_workflow

This application allows observing genome rearrangements in prokaryotic genomes. It provides rearrangements frequencies profiles and genomes graph representation.

GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein interactions, gene expression, disease-causing probabilities, genomic context). GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. Contact: bmhoan@gmail.com or walter.vincent.fr@gmail.com

GGGG's a Great Grid Generator (4G) is a boundary fitted, curvilinear, grid generation tool for 2-d finite difference modeling. It is written in Python with the Numeric extensions. Most classes have been written, but it does nothing useful, yet...

This application is intended to be a tool for easy, almost automatic, creation and calculation of gear transmission finite element models. It consists of a geometry and mesh generator based on GMSH and a finite element model based on GETFEM++.

This project incorporates a suite of tools that aim to allow researchers within Griffith's Imaging and Image Analysis Facility (GIIAF) to efficiently and effectively provide secure, centralised, web-accessible data storage, management and manipulation. The open-source Java-based OMERO software was customised to provide most of the features of this project.

**we moved to github** https://github.com/gimli-org/gimli Geophysical Inversion and Modeling Library

GIRAFFE Base Line Data Reduction Software is a set of python scripts and modules and a C library to reduce FITS images produced by the Very Large Telescope (VLT) FLAMES instrument.