Open Source Python Scientific/Engineering Software - Page 34

Charybdis is a Python-driven set of applications for solving partial differential equations on irregular domains.

This is a .exe program (originally python) to balance chemical equations. Just enter the reactants and the products, and this tool will automatically add the coefficients.

PyChemEq is an Open Source project which goal is to simulate chemical equilibrums. It provides classes (that are the project's "kernel" ) and a user interface using PyGtk and Glade. The whole project will be written in Python.

This Python program is used to balance a chemical reaction and to compute the material balance. Furthermore, it's able to check molecules and to write the condensed strutural formula from the name of an organic molecule. (Those both functionalities are still limited.)

This Chi Squared Calculator allows the user to enter any number of rows and columns, enter the observed frequencies used in the calculation, and the program will output the answer, as well as the degrees of freedom. This program runs on Python 3.2 ## BUT NO LONGER REQUIRES PYTHON to run! (Now in .exe form!) ## Sorry for the lack of floating point (Decimal) numbers support; attempting to input decimals will crash the program. Will fix soon! If you need any help, information, my email is: max-j-anderson@hotmail.co.uk

ChiantiPy is a Python package for the CHIANTI atomic database for astrophysical spectroscopy. It provides access to the database and the ability to calculate various physical quantities for the interpretation of astrophysical spectra.

Chloe - a chatterbot with charisma. Learns from experience, and speaks any language you teach her. Perhaps even useful, but surely entertaining.

CircularLogo is a light-weighted, easy to use web application that visualizes the intra-motif dependencies of a DNA or RNA motif.

CiteFlow is a focused desktop research workspace for students, researchers, and academic writers who want to manage PDFs, notes, citations, and bibliographies in one place. Create project-based workspaces for essays, articles, reports, literature reviews, and long-form research. Import PDFs, read them inside the app, search within documents, compare files side by side, highlight key passages, and add page-based notes. CiteFlow can assist with DOI metadata detection, keeps citation history linked to copied text, and generates citations and bibliographies in APA 7 and MLA 9. OCR support helps make scanned PDFs searchable, while project-wide search helps you find matching text across PDFs, highlights, and notes. Supported interface languages include English, Turkish, Chinese, Spanish, German, French, Russian, and Japanese.

Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.

An experimental language designed to be very simple, but expressive enough to represent mathematical constructions and have strong introspective capabilities.

This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials. If you use this code please cite this paper: P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia. http://www.ics.mq.edu.au/~diego/publications/hikm12.pdf

clusterviz allows to cluster three-dimensional data. The clustering process is visualized using OpenGL. As clustering algorithms the family of k-means algorithms is implemented, including mixture models.

CoCOOT is an extended collaboration system of COOT(Crystallographic Object Oriendted Toolit). It operates an add-on of original Coot. It enables to collaboration through internet.

A simple user interface to the R software environment. It is designed for people new to R and provides the user with easy access to their variables and data along with pointers to the most basic commands. It also allows for multiple people to share data across different sessions on different machines. In this way it also offers a collaborative environment for people to work together in remote locations.

The co-simulation adapation platform serves as programming framework and middleware to enable coupling of distributed, heterogeneous numerical models. The framework facilitates the adaptation and integration of new sub-models into a common simulation platform.

CodeIgor makes copies of given files, substituting user-defined patterns for given values. Every copy is related to a scpecific 'solution', so that you may define different versions of the same file, having the same patterns but different values.

An extension of Code_Aster to add multilingual support to it's varying GUI interfaces included in the default package. Eventually, we also intend to extend Code_Aster by contributing command file templates and extending the analysis abilities.

With CodonU, you can now easily read, manipulate, and analyze various file formats used in this kind of analysis, and generate high-quality graphics suitable for publishing. This open-source project incorporates various statistical measures necessary for codon usage analysis, including codon adaptation index, codon bias index, Gravy score, and correspondence analysis for both nucleotide and protein sequences. Start using CodonU today and see how it can revolutionize your genomics research! Find more at: https://github.com/SouradiptoC/CodonU Documentation link: https://souradiptoc.github.io/CodonU Example Link: https://github.com/SouradiptoC/CodonU/tree/master/Examples

Project now hosted at GitHub: https://github.com/djparente/coevol-utils

Cotnatex is a cognate - tool for the university of Heidelberg. Written by Peter Kostadinov and Dyanko Dyankov.

The Collaborative Computational Project for NMR (CCPN) provides tools and knowledge to maximise the impact of the biological NMR studies. The CCPN software facilitates data analysis and software integration. The project actively promotes the exchange of knowledge and provides training and best practices for the NMR community. CCPN also has a leading role in the development of a NMR data-sharing standard and coordination of NMR instrumentation proposals for RCUK and BIS. The 28 partners of CCPN jointly cover all aspects of biomolecular NMR and together they promote excellence in science in their respective fields.

A conference submission and review system designed for flexibility and re-use. Initially used for the ALIFE 8 conference (in 2002), and designed around the principles of the systems used for ALIFE VI and ALIFE VII.