Open Source Python Scientific/Engineering Software - Page 22

Researches have shown that immediate feedback can increase energy saving dramatically. YoMo aims to empower people using low-cost open hardware smart meters in their household. The metering system consists of a coordination unit, a raspberry pi, and several smart meters, arduino boards equipped with communication shields and our self-designed yomo metering shield. The smart meters are attached to household devices and monitor their energy consumption. The gathered data is timestamped and transmitted to the coordination device. This device offers interfaces to control the smart meters. On top of the software runs a apache webserver that provides all estimated data on our yomo project homepage. The system does not need any maintenance and works out of the box after the devices were integrated into the households Wi-Fi network. Link to the scientific paper: http://link.springer.com/article/10.1007%2Fs00450-014-0290-8#/page-1

This is an simple ecological model for lakes and reservoirs that contains a very detailed description of the most relevant nitrogen processes. The model is not very complete, but the main intention is to develop a library to be coupled with other models and use the full-mixed model as a testing version. A lot of things can be improved. I will read all the suggestions but I cannot promise that I will include all of them. Every new part of the code will contain the name of the author. If someone contributes improving the capabilities of this model in a substantial way, I will include that person as co-author of the model in the next version release. I hope this will promote people to contribute. Of course, fixing bugs or minor changes will also be mentioned with the corresponding author. Thanks a lot. I hope this can be the seed of a Open Source Community of Ecological Modellers.

Based on the Qt Python binding module PyQt4, guidata is a Python library generating graphical user interfaces for easy dataset editing and display. It also provides helpers and application development tools for PyQt4.

We have moved to GitHub: https://github.com/crs4/hl7apy Since version 1.3.3, we no longer distribute hl7apy with SourceForge. Install it using pip (recommended) or download it from GitHub (https://github.com/crs4/hl7apy/releases)

Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.

This is an implementation of a PN-sequence based channel sounder.

Python program for fitting rate constants to primarily kinetic data as 1st or 2nd order kinetics or autocatalysis. It also allows specific noise cancelling, data smoothing by fourrier transform, box averaging and flowing mean. For Python 2.6 or earlier.

This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function.

OmbakWarna is a spreadsheet based graphical analysis software utilizing numpy and matplotlib as analysis and graphic tools. Its design is inspired by IgorPro software. It is licensed under GNU General Public License, version 2. This is still works in progress. Some widgets are without functionality. There is no manual yet, but a few videos were uploaded to the files section showing simple tutorials for some plotting capabilities. The videos are also available in youtube: https://www.youtube.com/channel/UCg7yftEQ37fb8z89w9twhaQ

Python library for a fast and flexible graph data structure.

Ws2300 manipulates the LaCrosse WS-2300 weather station via its RS232/USB interface. It can read and write values, and can continuously log data from WS-2300 to a file or SQL database. All available documentation can be read online at http://ws2300.sourceforge.net/

Software Defined Radio Transceiver project is written in Python while using GNU Radio and USRP. The goal is to create a software HF transceiver with various modes. Go here for more info: http://apps.sourceforge.net/mediawiki/sdr/index.php?title=Main_Page

BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175.

C++QED is an application-programming framework for simulating open quantum dynamics in general. It has demonstrated the ability to simulate full Master equation of up to several thousand, and quantum trajectories of up to several hundred thousand dimensions. The basic idea is to allow users to build arbitrarily complex interacting quantum systems out of free subsystems and interactions (elements), and simulate their time evolution with a number of available time-evolution drivers. C++QEDv2 specifies a small grammar to describe composite quantum systems. Apart from providing a number of elements out of the box, there are tools which facilitate the implementation of new elements. These are being added continuously, as the need arises. The principal concept of the design of C++QEDv2 is that all information available at compile time should be processed as such, with the help of TMP. The framework is very sensitive to performance both in computer resources and coding/design.

A NEW GUI VERSION WILL BE RELEASED SOON! Thank you for visiting the Physics Calculator, provided by PIezoSystems Inc., please visit their company website at https://piezosystems.org. For other downloads, please visit our github page, https://github.com/PiezoSystems. We hope that you find this program useful and easy to use, for troubleshooting, please email us, contact@piezosystems.org. If any bugs were found, please email us at bugs@piezosystems.org.

Simple text-based python program for developing auditory working memory (Digit Span)

DesktopTools is a collection of small utillities which help to make your daily life easier. Since the tools themself are rather small (projectwise) I keep them not as individual projects, but have them under this collective name.

Doceval is a software that allows to discover the documentation included in a tarball. Basically it serves to identify if a given software project has doc at all and helps with a report to evaluate how much documentation it has and how good it is.

Jester is a gesture / stroke recognition framework for Python, written in Python.

Generic firmware for homebrew computer keyboard controllers.

Net.py is a tool for learning about neural nets. Currently, it only allows the user to experiment with a Hopfield net. I am now extending it to cover the Kohonen net. I'd be pleased to receive suggestions and criticism.

OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. Using our tool, you can choose features, like miRNAs, with the most significant diagnostic potential (based on the results of miRNA-seq, for validation in qPCR experiments).

We are trying to create a very complete physics teaching program. So, we would be pleased if you could suggest any improvement or create any module for us. To use any of these sources you need python 2.2, pygame and scipy.

This project delivers Linux support (USB driver and Tools) for a Digital Signal Processor (DSP) cards of the Signal Ranger series, see http://www.softdb.com/product_dsp.shtml for details) connected to a Linux host via USB.

Various projects focusing on, but not limited to, Python, robotics and microcontrollers.