Open Source Python Scientific/Engineering Software - Page 26
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Python Scientific/Engineering Software
View 202 business solutionsBrowse free open source Python Scientific/Engineering Software and projects below. Use the toggles on the left to filter open source Python Scientific/Engineering Software by OS, license, language, programming language, and project status.
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pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.
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t2t-pipe
automatic alignment pipeline for parallel treebanks
The *Tree-to-Tree (t2t) Alignment Pipe* is a collection of python scripts, co-ordinating the process of automatic alignment of parallel treebanks from plain text files with a single call from a unix command line. Supported Languages: DE, FR, EN -
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u/sbmv2012
Taxonomy assignment of metazoans using a python based pipeline
The aim of this project is to create an automated pipeline for taxonomic assignment of DNA sequences obtained from environmental samples. We develop a series of python scripts to process the raw sequence data obtained from benthic environmental samples and to taxonomical assignment of these sequences and finally to integrate all data in a relational database. -
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Non-stealth keylogger for Windows. Records mouse and keyboard (precision~10-15ms), log of events (disk size~2.5k/s) + log of operations (~ 0.2k/s). Standalone, with local copy of Python: unzip to install, delete to uninstall.NEW: hidden/visible icon
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A cross-platform library that computes fast and accurate SIFT image features. libsiftfast provides Octave/Matlab scripts, a command line interface, and a python interface (siftfastpy). Optimized with SIMD instructions and OpenMP .
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Gadgetron
Medical Image Reconstruction Framework
Medical Image Reconstruction Framework -
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This will be a place to release tools that have not yet been added to SciPy (or will not be added for whatever reason). Currently an interface to ImageMagick is here.
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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RDRPOSTagger
A Rule-based Part-of-Speech and Morphological Tagging Toolkit
RDRPOSTagger is a robust, easy-to-use and language-independent rule-based toolkit for Part-of-Speech (POS) and morphological tagging. RDRPOSTagger obtains fast performance in both learning and tagging process. RDRPOSTagger also achieves a very competitive accuracy in comparison to the state-of-the-art results. RDRPOSTagger now supports pre-trained POS and morphological tagging models for Bulgarian, Czech, Dutch, English, French, German, Hindi, Italian, Portuguese, Spanish, Swedish, Thai and Vietnamese. Additionally, RDRPOSTagger supports the pre-trained Universal POS tagging models for 40 languages. See the full usage of RDRPOSTagger at: http://rdrpostagger.sourceforge.net/ -
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SCaVis
Scientific Computation and Visualization Environment
SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. The project was migrated to DataMelt. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer -
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dl141th
Configure / read out the DL-141TH data logger
The DL-141TH temperature/humidity data logger comes with a proprietary software which has a quite large footprint and is only available for Windows, but not for Linux. This project provides - a description of the USB/serial protocol - a python script to configure / read out the DL-141TH data logger which can be used at least from Windows and Linux -
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A.L.V.I. e' nato per essere un semplice ma modulare Bot, in grado di interagire con l'essere umano attraverso il linguaggio naturale ed eseguire svariati compiti, come leggere ad alta voce Mail, notizie, Feeds. Tutto in Italiano!
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Argo
ARGO is a program for analysis of electronic structure calculations
The `Argo' program draws its name from ancient Greek, referencing the vessel of the same name commissioned for Jason's renowned Argonauts expedition. This choice symbolizes the pursuit of making the best use of quantum chemical calculation results. ARGO facilitates the analysis of results obtained from quantum chemistry codes, specifically Gaussian. This task is achieved through a set of Python scripts. Our code is freely available throughout the academic community with the ambition to be used, to be supplemented by others, and become an indispensable tool for optimum utilization of quantum chemical calculation results. -
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AstroMate
Please see AstroTortilla -project instead.
AstroMate is a project for automating repeating astrophotography tasks, such as equatorial mount polar alignment and target centering, by integrating existing tools and especially plate solving to the ASCOM telescope control interface. This project has been replaced by AstroTortilla. -
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AutoFlight
AutoFlight is a powerful, open source AR.Drone control program.
AutoFlight features AR.Drone control with a gamepad or joystick, sensor data logging, 3d mapping, Python scripting to automate the drone's behavior and Arduino extensions. -
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BATS
Bayesian Adaptive Trial Simulator
A user-friendly, quick simulator for Bayesian Multi-Arm Multi-Stage Trials -
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Banyan is an enterprise class, web based, information management system that helps people work collaboratively to solve complex problems. Banyan increases project performance and reduces risk through the power of collaborative clear thinking.
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Blivion
Blivion: BioLayer Interferometry Virus On (only)
Blivion is a software tool for analysing biolayer interferometry measurements of the binding of large vesicles such as influenza virus onto a two-dimensional ligand-coated substrate. -
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"Blue Planet" is a research project simulating the behaviour and darwinian evolution of unicellular lifeforms, each controlled by its own genetic program. Moreover, "Blue Planet Inhabitants" are suited for swarm intelligence and swarm research.
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BBCalc (BodyBuilding Calculators) is a set of calculators related to body building and fitness topics.
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ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
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CAPLET
GDS visualization and parallelized capacitance extraction
Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material. -
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The CAPS Scenario Builder will allow government officials, conservation groups and others to submit "scenarios" for proposed changes to land cover and infrastructure so that these changes can be assessed for their impact on ecological integrity.
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# CSV Splitter Uma ferramenta para dividir arquivos CSV em múltiplos arquivos com base na quantidade de registros especificada, mantendo a integridade dos dados e permitindo configurações de charset, separador e formatação. Ideal para lidar com grandes arquivos CSV que precisam ser fragmentados para melhor manuseio e processamento. ## Funcionalidades - **Divisão de CSV**: Divide o arquivo original em múltiplos arquivos CSV, com o número de registros por arquivo definido pelo usuário. - **Detecção Automática de Charset e Separador**: O charset e o separador do arquivo de origem podem ser detectados automaticamente ou especificados manualmente. - **Configuração de Destino Personalizável**: Permite definir charset e separador de destino. - **Formatação de Dados**: Formatação opcional para os padrões BR, EUA, EU e UK, com exemplos para ajudar na escolha do formato desejado. - **Interface Gráfica Intuitiva**: Interface com `Tkinter`, incluindo barra de progresso e log do proc
