Open Source Python Scientific/Engineering Software - Page 25

Blitzer is a simple tool for driving the SX-Blitz microcontroller programmer from Parallax. There is now a version for PalmOS devices.

"Blue Planet" is a research project simulating the behaviour and darwinian evolution of unicellular lifeforms, each controlled by its own genetic program. Moreover, "Blue Planet Inhabitants" are suited for swarm intelligence and swarm research.

Compares botnet detection methods by computing the error metrics by reading the labels on a NetFlow file. The original NetFlow should have a new column for the ground-truth label, and a new column with the prediction label for each botnet detection method. This program computes all the error metrics (TPR, TNR, FPR, FNR, Precision, Accuracy, ErrorRate, FMeasure1, FMeasure2, FMeasure0.5) and output the comparison results. It also ouputs a png plot. The program can compare in a flow-by-flow basis, or it can apply our new botnet detection error metrics, that is time-based, detects IP addresses instead of flows and it is weighted to favor sooner detections. See the paper for more details.

BoulderALE is an RNA alignment editor, which allows for the annotation of basepairs, annotation and collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences and base composition given a secondary structure.

Volumetric file viewer for the human brain. Easy, powerful and flexible fMRI/MRI brain research and clinical neuro-surgery tool. Using state of the art open VTK 3D library, the proven Qt GUI toolkit, coded in Python.

Brainlab is a Python toolkit to aid in the design, simulation, and analysis of spiking neural networks with the NeoCortical Simulator (NCS).

This project aims to organize a brainstorm or a bibliographic revision in a network (graph). With this organization the users are able to visualize the main points of the brainstorm (the hubs in the network). Moreover, they can access the information through the rede, interactively, clicking on the edges or nodes! All information is associated with a reference list (imported from a bibtex file). This project uses Python, Web2py, MariaDB and VIS.js (D3.js).

BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.

This project is UI to guide the user through the steps of home brewing. Each beer has a recipe of ingredients, but it also has a “recipe” for the process to make the beer. This app allows you to load a recipe (BeerXML), guide you through the brewing steps and record any details so that you can improve next time. By default, this app relies on user inputs and feedback from the real-world. There are easy hooks to a link up a real system, so that if you wanted to automate some of the input and feedback it could be possible (ex. read temperature from sensor. Turn heat source on/off). This project uses the free Maker Edition of the Ignition platform. https://inductiveautomation.com/ignition/maker-edition Sierra Nevada and Stone Brewery use the (paid) Ignition platform. https://inductiveautomation.com/resources/casestudy/ignition-system-meets-all-user-requests https://inductiveautomation.com/resources/casestudy/brewery-improves-efficiency-in-multiple-areas-with-ignition

The Bristol Cloud Service simulation runner is a cloud computing Software as a Service designed to enable users to quickly launch simulation code on Amazon AWS' Elastic Compute Cloud (EC2). BRiCS is written in Python using the Django framework and interacts with EC2 using the boto API. BriCS enables multiple simulation runs to be launched in parallel from a web browser. Model configuration (parameters) files are uploaded via the browser and results files are downloadable on completion. BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. Why wait days or weeks for a series of trials to complete when you can run them in parallel in the time it takes to complete one?

Brian is a new simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists.

LaTex to braille translator for Maths, intended to be able to support multiple braille codes.

Video monitoring tool for insect analysis

Buildes is an integrated development environment that assists the user in creating building information. It reads a text (session) file from which it compiles the information. It then allows the user to browse, analyze and export the resulting building knowledge. The compilation system is written in pure Python. The building components created are rendered in PythonOCC. The GUI is written using PyQt.

BushMan is a web interface and a quality assurance tool for biological sequence assembly. It is a small application that helps process chromatograms, and it assembles using Phred and Phrap. It produces a FASTA formatted consensus sequence.

Open, free and extensible plataform for developing robotics projects

ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.

That project aims at providing a clean API and a simple implementation, as a C++ library, of an Airline-related Inventory Management system. That library uses the Standard Airline IT C++ object model (http://sf.net/projects/stdair).

That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.

The name has changed: that project has become the Airline Travel Solution Provider, AirTSP for short.

That project aims at providing a clean API and a simple implementation (C++ library) of an Airline-related Seat Inventory Availability Calculation system. That library uses the Standard Airline IT C++ object model (http://sf.net/projects/stdair).

That project aims at providing a clean API and a simple implementation, as a C++ library, of a Travel-oriented fare engine. It corresponds to the simulated version of the real-world Fare Quote System.

That project aims at providing a clean API and a simple implementation, as a C++ library, of a Travel-oriented Distribution System. It corresponds to the simulated version of the real-world Computerized Reservation Systems (CRS).

That project aims at providing a clean API, and the corresponding C++ implementation, for the basis of Airline IT Business Object Model (BOM), ie, to be used by several other Open Source projects, such as RMOL, Air-Sched, Travel-CCM, OpenTREP, etc.