Open Source Python Scientific/Engineering Software - Page 23

ZMapServer is a Zope Product that provides a clean interface to the MapServer (http://mapserver.gis.umn.edu) web mapping application.

Software to accompagny the european eConstruct (www.econstruct.org) project's building&construction XML (bcXML) standard.

The BladeDesigner package is a CAD/CAE tool providing classes for turbomachine blade design. So far it is optimized to be useful in the aerodynamic design process. It comes with a GUI but is most powerful with user defined python scripts.

A project to host code developed for the Microtransat challenge, a race between autonomous sailing robots. This project is intended for both supporting code such as tracking systems and robot control systems or parts of robot control systems.

Documentation: https://parent-map.readthedocs.io/

The PyCogent project is moving to GitHub. When completed, you will find us at http://github.com/pycogent/pycogent/. You can find the PyCogent website at http://www.pycogent.org.

Modelio-Open is a project hosting a set of open source extensions (SoaML, SysML and UML Testing Profile) for a previous version (1.2) of the Modelio Free tool . Currently, the lastest version (2.x) of Modelio modeling and generation tool is available at http://modelio.org/downloads/download-modelio.html. All extensions are downloadable at http://forge.modelio.org/projects.

2D Structural Analysis in Python by Ritchie Vink A collection examples of 2D Finite Element Analysis (FEA) made with Jupyter Notebook Lab - https://jupyter.org/ To install Jupyter - https://jupyter.org/install ===== App is available on Play Store -> https://play.google.com/store/apps/details?id=com.ulm.struct If you want to download a python editor for your android smartphone follow this link -> https://play.google.com/store/apps/details?id=com.ulm.python

Driver support for 3D Controller Hardware. We hope to support SDL Input, DirectInput, and other major controller API's including game consoles and embedded systems.

Aberration Detection in Tumour Exome (ADTEx) is a tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples.

APLpy (the Astronomical Plotting Library in Python) is a Python module aimed at producing publication-quality plots of astronomical imaging data in FITS format. Visit http://aplpy.sourceforge.net/ for tutorials and documentation.

The Arabic Corpus {compiled by Dr. Mourad Abbas ( http://sites.google.com/site/mouradabbas9/corpora ) The corpus Khaleej-2004 contains 5690 documents. It is divided to 4 topics (categories). The corpus Watan-2004 contains 20291 documents organized in 6 topics (categories). Researchers who use these two corpora would mention the two main references: (1) For Watan-2004 corpus ---------------------- M. Abbas, K. Smaili, D. Berkani, (2011) Evaluation of Topic Identification Methods on Arabic Corpora,JOURNAL OF DIGITAL INFORMATION MANAGEMENT,vol. 9, N. 5, pp.185-192. 2) For Khaleej-2004 corpus --------------------------------- M. Abbas, K. Smaili (2005) Comparison of Topic Identification Methods for Arabic Language, RANLP05 : Recent Advances in Natural Language Processing ,pp. 14-17, 21-23 september 2005, Borovets, Bulgary. More useful references to check: ------------------------------------------- https://sites.google.com/site/mouradabbas9/corpora

Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone.

Image analysis program that extract the movements of the bacteria from digitised movies and data processing associated.

The name has changed: that project has become the Airline Travel Solution Provider, AirTSP for short.

This project consists of two python based parts, ParaPost and TurboVTK, in order to post process Turbomachinery CFD results with ParaView and VTK.

The Continuum Solvation Nonpolar Surface Area (CS-NPSA) package is a general purpose program suite for defining and computing nonpolar surface areas based on continuum solvation models. It is based on the classification of individual surface elements representing the solvent accessible surface used for the description of the polarized charge density elements in the CS models.

CircularLogo is a light-weighted, easy to use web application that visualizes the intra-motif dependencies of a DNA or RNA motif.

Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.

CodeIgor makes copies of given files, substituting user-defined patterns for given values. Every copy is related to a scpecific 'solution', so that you may define different versions of the same file, having the same patterns but different values.

Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein interaction networks and domain-domain interaction networks with the cluster-quality metric cohesiveness. The metric is locally maximized on the holistic level of protein interactions while sophisticated connectivity constraints on the domain level are utilized to account for the exclusive and thus inherently combinatorial nature of the interactions within such assemblies. The original publication can be found on http://bioinformatics.oxfordjournals.org/content/30/17/i415 .

DANGLE: A Bayesian inferential prediction method for protein backbone dihedral angles and secondary structure assignments, solely from sequence information, experimental chemical shifts and a database of known protein structures and their shifts.

dedalo is a 2d cad drawing software written in python3. It is licensed under the GPLv3. Dedalo features: layers, snaps (endpoint, intersection, midpoint), line, polyline, rectangle, delete, polygon, rectangle, arc, circle, points, text, spline, freehand drawing. Move, scale, rotate, offset, cut, extend, hatch, dimension, copy. English, italian languages SVG read-write. Not all features all fully supported. For more information a user manual is provided(pdf format, italian).

A client program compatible with the INDI standard (see http://indi.sourceforge.net) for remote telescope and device control. It works under Windows as well as Linux. It is writen in Python and uses the GTK in order to display the GUI.