Search Results for "rpy2"
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Showing 4 open source projects for "rpy2"
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KS Workbench
a set of scripts that helps you analyze physiology datasets
For the analyses of patch-clamp data (obtained from Igor/MME) using Python. The following modules are the minimum requirements: - Scipy (including numpy, matplotlib) - h5py In addition, following modules are required in order to fully make use of KS Workbench: - scikit-learn (for some fitting algorithms) - rpy2 (for some statistical analyses) -
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EpiMINE
program for mining epigenomic data
...: rpy2(v2.8.1), pysam(>0.8.4), pybedtools(v0.7.7) and wxpython (only for GUI form) R with following packages: gplots, ggplot2, RColorBrewer, FactoMineR, kernlab, bnlearn, igraph, fastcluster, caret and ROCR bedtools (2.16/2.17/2.25) Manual & different forms of EpiMINE can be downloaded is available under "Browse Files" section For any help, you can reach us at epimine.help@gmail.com -
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BayesRate
Bayesian estimation of diversification rates
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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Provides a graphical user interface to the xcms module for R used primarily for processing mass spectrometry data. The primary python modules used are PyQt4, matplotlib, rpy2, and pytables for HDF5 support.
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