Open Source Java Scientific/Engineering Software - Page 49

Jnomics is a collection of cloud-scale DNA sequence analysis tools

Lucon is a user friendly graphical concordancer. It runs on UTF-8 text and xml files and it allows to search for a sole word, for terms, for words at a certain distance and it displays the contexts of the searched terms.

MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic

The MDS is sponsored by the Applied Math dept at the U Colorado, Boulder. We have created a system for presenting a mathematical text online, letting users embed discussions (including math symbols!) directly in the text.

Matt's MathTools is a Java application designed as an aid in preparing printed math tests. It is easily embedded in other Java applications or it can be used alone as a single-user desktop app. It includes a scripting environment, numerous demonstration classes and several general utilities. A scripting tutorial is also available.

This plugin allow to visualize several e.g. gene expression values simultanously using pie charts. * Please cite http://www.biomedcentral.com/1752-0509/4/164 *

The purpose of the project is moving large-size of biological database and FASTA computation onto wide area network by leveraging distributed computation-enabled storage developed for the field of logistical network.

Nexist is being developed based on a few hypotheses regarding Topic Maps (XTM) as an interface to a collaborative knowledge repository system. Nexist is a reference implementation for further collaborative development.

A plugin for the Eclipse IDE implementing NumericalChameleon: a powerful numerical convertor, supporting more than 2300 units in 78 categories (physics, radixes, exchange rates, unicode, etc). Fully integrated in the Eclipse IDE (refactoring, copy/paste)

Ordering and Programming Gateway component developed by TELESPAZIO in the frame of ESA activities for providing a reference implementation of Candidate Standard OGC 06-141r6 Ordering Services For Earth Observation Products.

OpenBRR2 project focuses on the re-write of the original "OpenBRR - Data" (http://sourceforge.net/projects/openbrr) project. The aim is to develop a hosted data aggregation application for all F/LOSS projects.

OpenForecast is a package of general purpose, forecasting models written in Java that can be applied to any data series. No knowledge of forecasting is required. Using this package, the most appropriate algorithm for your data will be selected.

HIPAA compliant medical billing, scheduling, and account management system. Integrated with x12 standard electronic transactions, OpenBilling XML standards, and hcfa-1500 legacy support. Complete cross platform performance with java 2 standards.

OpenTAPAS: Technology Assisted Practice Application Suite (TAPAS) is a term that describes digital tools that assist physicians deliver care in a paper based office. OpenTAPAS builds upon the HL7 compliant Electronic Medical Summary Standard

QA-distri contains a set of ImageJ plugins for QA in digital radiology. The plugins are created in LUCMFR, University Hospitals, Leuven, by Frank Rogge. He's works currently at AVN as medical physicist.

Library made with the quantity/formatter pattern. (Currency/CurrencyFormat, Density/DensityFormat, Dimension/DimensionFormat, Distance/DistanceFormat, ElapsedTime/ElapsedTimeFormat, Temperature/TemperatureFormat, Volume/VolumeFormat, Weight/WeightFormat)

RAGE (Random Variate Generator) is a graphical tool for unidimensional discrete distributions. RAGE generates random values and simulates various discrete distributions by using different algorithms.

A visualization and design tool for RNA secondary structure

RandService is a Web Service which supplies pseudo- or true- random numbers through JAX-RPC API. Any random number generators can be used behind this Web Service.

Regexp testing tool allows to apply group of regexps to huge arrays of data (millions or so) in order to investigate search or search/replacement possibilities of regexp group.

SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.

TrafficModeller is an open-source, graphical user interface (GUI) tool for the rapid high-level modeling and generation of vehicular traffic. TrafficModeler supports a variety of traffic definition models representing a wide range of traffic patterns

The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.

SmartTester is a Java based test automation framework, where you can remotely manage and run tests. Furthermore the framework returns a result file. To use a test against different DUTs you can create multiple datasets with arguments.

This is an Android App for 2.3.3 Android OS and above. It deals with Hard- and Software Sensors which are integrated in Nowadays Smartphones. The User can select the Sensors and observe the current values of - Accelerometer - Gyroscope - Magnetometer - GPS Position - .... and other Sensors A Stream containing the Sensor-Values in CSV- Format by WLAN To a Client and/or a Stream To a SD-Card can be started and stopped. The Sensor-Update frequency can be adjusted. There are some GPS-Algorithms running in the Background which transform the GPS data in different coordinate frames. The Stream via WLAN uses the User Datagram Protocol (UDP) Interface. In order to receive the data you can use something like the Java File "QuoteClient"in the Files-Section.