Open Source Java Scientific/Engineering Software - Page 52

DIET Agents is a lightweight, scalable and robust multi-agent platform in Java. It is especially suitable for rapidly developing P2P prototype applications and/or adaptive, distributed applications that use bottom-up, nature-inspired techniques.

The Diffraction Image Experiment Repository (DIMER) is an online archive for diffraction experiments, providing secure storage during analysis and publishing of experiments so they can be linked to, searched, and integrated into other databases.

An application that will display DIS entities on a map.

DIVAT (Diagnostic Immunohistochemistry Visualization and Analysis Tool) is designed to graphically analyse comprehensive data sets of immunohistochemical results as those used in clinical diagnostic pathology.

DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV

Distributed Java Fractal Generator. DJFractals can computes fractals in arbitrary precision using any CPU available from high performance multi-processors clusters of computers to grid of JavaCards and even at the same time.

DLESE (Digital Library for Earth System Education) is a community-supported digital library dedicated to the collection, enhancement, and distribution of materials that facilitate learning about the Earth. Sponsored by the US National Science Foundation.

A java based digital logic simulator, designed to be used as an educational tool. uses a GUI to allow users to quickly and easily create and visualise circuits from simple components. User can create custom components

DNAGalaxy is an attempt to produce an open-source bioinformatics software alternative to the expensive DNAStar Lasergene software. Its features currently include Blast and Entrez searching, a frontend to clustal and a sequence editor. It requires java1.5

DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.

The ultimate goal of this project is to create a Java based DNA viewer that is both flexible and extendable. The initial phase will involve the design and implementation of a framework that can be used either with this project or other similar projects.

DODDLE-OWL is a domain ontology development tool for the Semantic Web. DODDLE-OWL makes reuse of existing ontologies and supports the semi-automatic construction of taxonomic and other relationships in domain ontologies from documents.

The DERI Ontology Management Environment (DOME) is developed by the Ontology Management Working Group (OMWG). The aim is to provide tooling support for Editing & Browsing, Versioning & Evolution as well as Mapping & Merging.

DORY is a java program developed for searching KASH protein in large protein databases (in FASTA format). DORY is upgraded to DORY2. DORY2 required BLAST+ to run. ***Please make sure BLAST+ is installed on your computer.*** Please see the following publication for detail: Zhou X, Graumann K, Wirthmueller L, Jones JDG, Meier I (2014) Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants. The Journal of Cell Biology 205(5):677-692. http://jcb.rupress.org/content/205/5/677.full Please see other useful tools for biology research: https://sourceforge.net/projects/cloversystem/?source=directory

This projects intends to develop a complete distributed peer-to-peer environment for running heuristic optimization, modelling, artificial life, etc applications. This involves a network engine, libraries and different user interfaces. All this in java.

The aim of this project is to produce high-res/quality printable star maps according to your latitude. This projected was founded at the Deutsche SchülerAkademie Steinmühle 2004. It's a cooperation of the astronomy and cg courses.

DSOL is a full featured multi-formalism, distributed simulation environment developed at Delft University of Technology (The Netherlands). DSOL has support for discrete event and for continuous modeling. Formalisms supported are event scheduling, DEVS, flow-based simulation, and continuous modeling through sets of differential equations. The first release was introduced at IEEE's Winter Simulation Conference in 2002. Since then, numerous papers and PhD dissertations have been developed, with applications in the fields of transportation and traffic, logistics, supply chain management, gaming and training, health care, and many others.

A Digital Signal Processing Program for educational purposes, written in Java, tested on Windows, should work on Linux too. Plugin architecture for inputs, outputs, filters, analisys.

this project providers utilities for digital signal processing technique

DS module for query processing.

The program Visualizes the diffusion of water in the brain through ellipsoids.

Framework for Integration between Intelligent Environments and the Brazilian Digital Television System

Dados Observados is a application to share Climatological data. Climatological data, especially precipitation and reservoirs volumes measurements, are fundamental input to decision support software to natural resources managers.

A .Net Library that lets you make full use of multi-core and multiprocessor computers. It is very efficient, and easily integrated into existing applications. It is modeled after the Parallel FX usage model, and is faster than the PFX too.