Search Results for "bis-snp"
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Showing 181 open source projects for "bis-snp"
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Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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BQSKit
Berkeley Quantum Synthesis Toolkit
The Berkeley Quantum Synthesis Toolkit (BQSKit) [bis • kit] is a powerful and portable quantum compiler framework. It can be used with ease to compile quantum programs to efficient physical circuits for any QPU. A standard workflow utilizing BQSKit consists of loading a program into the framework, modeling the target QPU, compiling the program, and exporting the resulting circuit. -
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JKSV
JK's Save Manager Switch Edition
This started as a simple, straight port of my 3DS save manager I publicly released in 2016. Despite not originally wanting to take it too far, I continued working on it for fun when I can. Dump and restore account save data. Dump and restore device saves shared by all users (Games such as Animal Crossing). Dump and restore BCAT Data. Dump and restore cache Saves. Dump system save data. Dumping this data is always enabled, but writing back needs to be enabled from the options menu. Writing to... -
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somatic.sh
script for somatic SNP and Indel calling
somatic.sh is a shell script to run varscan somatic for somatic variant-calling, and Annovar to annotate. It calls both SNPs and Indels. It also produces 2 MAF files compatible with MutSigCV. Now the script allows for multithreading. The script is updated according to new format. -
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NIC Kommander
Ersatz für den Norton Commander
NIC imitiert einen Norton Commander für Windows 95 bis Windows 10 und weitere Versionen. Der Editor Hexkon eingnet sich sowohl Textdateien wie auch für Binärdateien. -
Forever Free Full-Stack Observability | Grafana CloudBuilt on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
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PaintBrutsch
Ein Malprogramm, das selbst Microsoft gefallen dürfte
Ein Malprogramm, ähnlich dem Paint von Windows 95 bis Windows XP, das sogar noch unter den neuesten Windowsverionen läuft mit einigen erweiterten Funktionen, wie Kontrast und Farbreduktion, zum Editieren von einfachen Ikonen und Kursoren geeignet, kein Fotoshop! -
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o3Measurement
o3Measurement - The Open Source Workshop Solution
...Entwickelt für den Einsatz in Werkstätten, Service-Centern und technischen Betrieben. o3Measurement kombiniert alle wesentlichen Werkstatt-Funktionen in einer einzigen, intuitiven Anwendung. Von der Messdatenerfassung bis zur kompletten Betriebsorganisation. -
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proSeq
ProSeq is a GUI program to edit and analyse DNA polymorphism datasets
...It shows sequence alignments in a graphical window and allows the user to edit, manipulate and analyse sequences in various ways. ProSeq4 includes tools to analyse DNA polymorphism, scan for selection, do PCA and reconstruct phylogenies from sequence or SNP data. The program can also run coalescent simulations and generate and visualise phylogenies. The main changes in Proseq4 compared to Proseq3: - Multiplatform. Binaries available for Windows, Mac and Ubuntu. - It is now a 64-bit program, which can handle larger datasets (genome-scale from multiple individuals). - TreeViewer can show multiple phylogenies in densiTree-like style - Principal components analysis Disclamer: No warranty of any kind is provided - use at your own risk -
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VitalSignsCapture
Download data from medical device interfaces in ICU & Anaesthesia
A C# .NET app to download or capture data from several medical device interfaces such as Datex AS3 S/5 Anesthesia, Philips Intellivue, GE Dash, Mindray HL7, Spacelabs, Draeger Infinity, Draeger HL7 patient monitors, GE Engstrom, Draeger (MedibusX), Maquet (Servo-i, Servo-U & Flow-i), Puritan Bennett ventilators, Covidien BIS Vista cerebral monitor, Fresenius Agilia, Alaris Carefusion, BBraun Spacecom syringe and volumetric pumps, Roche Cobas ASTM ABG analyzers. Requires Visual Studio 2022, .NET 8 or Visual Studio for Mac to compile. Support for capture from other monitors is planned in future. -
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ServerArk by wahke
Linux game server UDP flood analyzer and protector
...Verdächtige Pakete werden per iptables bereits auf Kernel-Ebene blockiert, bevor sie den eigentlichen Server erreichen. So bleibt der Game-Server auch unter starken Angriffen weitgehend spielbar, da nur legitimer Traffic bis zur Anwendung durchdringt. ServerArk kann interaktiv mit detaillierter Ausgabe oder unauffällig als Daemon mit täglichen Logdateien betrieben werden. -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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TC-SpieleInventarVerwaltung
Inventarwaltung für Games Linux & Windows
... - einfach starten und Spass haben, ohne Installation - Datenbank - Freigabe Logos inclusive - Livesuche - Darkmodus - Export und Import via CSV - Detailansicht mit allen Einträgen plus Freigabe Logo - mehrere Bilder möglich und im Detail bis max 800px anzeigbar - Maus und Tastatur- bedienbar - Bilder hinzufügen über Erstellen und Drag& Drop - Plattform-Filter - getestet unter Linux MX (Debian) und Windows 11 und noch kleine andere Sachen Gebaut nach den Vorlieben, wie ich eine Verwaltung benötige. ----------------------------------------------- License: Freeware (Closed Source) See LICENSE.txt for details -
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kSNP
kSNP4 does SNP discovery and SNP annotation from whole genomes
kSNP4 identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP4 can take 100's of microbial genomes as input. A SNP locus is defined by an oligo of length k surrounding a central SNP allele. kSNP4 can analyze both complete (finished) genomes and unfinished genomes in assembled contigs or raw, unassembled reads. ... -
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DSXR18
Aautomatically downloads snapshots from the Behringer XR18
...In the *.scn file, it saves the name of the snapshot in such a way that after loading the file, it is set in the Snapshots window so that the scene can be saved under its original name. *.scn files are compatible with the X-AIR-Edit program. https://www.buymeacoffee.com/piotrzaczek/dsxr18-kopiuje-snp-z-xr18 -
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ntx
Neutrality tests using the SNP site frequency spectrum
Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations. -
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AundS
Programm zur Eingabe für Arbeits- und Sozialnoten
Bis zu 10 Lehrer können Sozialnoten für ihre Schüler eingeben. Es wird ein Durchschnitt angezeigt und man kann die Durchschnittsnoten der SuS in einer Datei speichern -
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A tool to estimate trends in recent effective population size trajectories using genome-wide SNP data.
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PhaseDel
Phasing-based somatic deletion caller from single-cell WGS data
...It is highly specialized for discriminating genuine somatic focal deletions (several bases to kilo-bases in length) from excessive SV-like artifacts, which are inevitably occurring during single-cell whole-genome amplification. PhaseDel accurately detects such true deletions based on the linkage information between deletion breakpoints and nearby germline heterozygous SNP sites. The important features of PhaseDel are: • Accurate identification of somatic focal deletions at single-base-pair resolution in scWGS using phasing information • Estimation of the genome-wide somatic deletion rate for a given cell with the controlled FDR level • Characterization of underlying DSB repair mechanisms for identified deletion candidates A more detailed description of the tool is provided in the [[wiki]] tab. -
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EXCEL-ArbeitsZeitErfassung
Work time tracking EXCEL file in German
...Die ausdruckbaren Blätter eignen sich unterschrieben als Arbeitszeitnachweis. Folgende Tabellenblätter sind enthalten: - Copyright - Einstellungen - Januar bis Dezember (12 Blätter) - Jahresübersicht - Feiertage - Zeit-Zuschläge (Berechnung nach AVR) -
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MetaPhat -meta-pheno-association-tracker
Multivariate traits genome-wide association analysis and decomposition
MetaPhat is an open sourced program to detect optimal subset traits on lead SNP associations from multiple biomarker GWAS summary results. Best traits are derived from systematic decomposing multivariate associations into central traits based on optimal BIC and P-value from multivariate CCA models. SNP trace results are plotted and clustered to dissect and improve the specificity of mv phenotype-genotype associations. -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)... -
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snpEff is a fast variant effect predictor (SNP, MNP and InDels) for genomic data. It is integrated with Galaxy so it can be used either as a command line or as a web application.
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ParseCNV CNV call association software takes CNV calls as input and creates SNP based statistics for CNV occurrence in population study cases and controls then calls CNVRs based on neighboring SNPs of similar significance.
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Protokoll
Ein standalone Protokollprogramm
...Teile davon sind Bestandteil des Projektes „Sysiphus BER“, die Entwicklung dieses Programmes hat jedoch schlicht das Hauptprojekt überholt. Das Programm basiert auf „Tagesordnungspunkten“, wobei so ein Punkt alles von einer Überschrift, ein einfacher Text bis hin zu einer Einstellung mit Beschluss sein kann. Dazu kann man solche TOP’s spezialisieren und Metadaten (z.B. MA-Name, MA-Vorname, etc.) hinzufügen. Es kann ein Eingabeformular definiert werden, in dem die nötigen Daten für einen Top erfasst werden. Mit Hilfe von Vorlagen (Templates) werden diese Daten dann visualisiert. Ebenfalls stehen Textbausteine zur Verfügung, die man in Texte einfügen kann. ... -
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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hppRNA
A Snakemake-based handy parameter-free pipeline for RNA-Seq analysis
hppRNA package is dedicated to the RNA-Seq analysis for a large number of samples simultaneously from the very beginning to the very end, which is formulated in Snakemake pipeline management system. It starts from fastq files and will produce gene/isoform expression matrix, differentially-expressed-genes, sample clusters as well as detection of SNP and fusion genes by combination of the state-of-the-art software. The first version handles protein-coding genes, lncRNAs and circRNAs and includes six core-workflows such as (1) Tophat - Cufflink - Cuffdiff; (2) Subread - featureCounts - DESeq2; (3) STAR - RSEM - EBSeq; (4) Bowtie - eXpress - edgeR; (5) kallisto - sleuth; (6) HISAT - StringTie - Ballgown. ...
