somatic.sh is a shell script to run varscan somatic for somatic variant-calling, and Annovar to annotate. It calls both SNPs and Indels. It also produces 2 MAF files compatible with MutSigCV.
Now the script allows for multithreading.
The script is updated according to new format.

Project Activity

See All Activity >

Follow somatic.sh

somatic.sh Web Site

Other Useful Business Software
Ship Agents Faster Icon
Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of somatic.sh!

Additional Project Details

Registered

2017-07-30
Report inappropriate content