Open Source Java Scientific/Engineering Software - Page 50

ConcernMeBS helps developers detect code smells. Based on concern to code mapping, ConcernMeBS automatically finds and reports classes and methods that are prone to surfer from code smells in OO source code.

Associate requirements, features, bugs, etc. (concerns) with Java code (types, methods, and fields) using drag-n-drop and right click.

A Controlled Language Programming (CLP) compiler, runtime engine, and development IDE for writing software in a natural (but somewhat restricted) language that clearly represents the real world concerns and maps to a 3GL (Java/Groovy) for execution.

Concierge OSGi is an OSGi (Open Service Gateway Initiative) R3 framework implementation optimized for resource-constrained devices like mobile and embedded systems.

Conference Information System Stuttgart (ConfISS) is a conference management system to host conferences. It helps conference chairmen to administrate their conferences, reviewers to write their reviews and authors to easily submit their papers.

Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.

Parsers and other tools for analyzing source code quality.

System software for building privacy-sensitive context-aware systems that make use of sensor data to provide useful services for end-users.

A ContextTree is a way of dynamically forming relationships between information: the same information can be viewed in different ways, depending on what you want from it.

Contextor is a light-weight simple-to-use Java based library to help developers and researchers working with the general concept of a resource; as examples, resources can be text resources, web resources, images and videos.

The goal of this project is to combine different sources of information as well as methods to help in the process of gap closing / genome finishing in high throughput sequencing.

Convert user-saved tracks from GPS-Tracks for iPhone to KML files for Google Earth. The GPS-Tracks iPhone application is available from the App Store or from http://www.gps-tracks.com . It can save recorded GPS tracks to the iPhone storage. This little Java applet provides the functionality to convert these saved tracks to KML files, for use with Google earth. Under Windows, it uses the synced files from the iTunes phone files backup, and extracts the tracks from there. Under Linux, it uses the virtual file system provided by libgpod (which provides an iPhone-gvfs-bridge) and gvfs-fuse (which offers gvfs virtual filesystems as Linux FUSE filesystems). Please note that this app is rather rudimentary. If you run into problems, please open a ticket to describe the issue; time permitting, I'll try to fix it.

ConvertMAS - molecule converter; use to convert Chemical File Formats. It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available for conversion of Chemical file formats; but ConvertMAS mainly works on mol, mol2 and sdf effectively.

Conzilla is a concept browser. It browses and edits 'context-maps', a construct similar to conceptual models, UML diagrams or mind-maps. Conzilla uses RDF to describe and distribute such models.

CopperCore, a J2EE runtime engine for IMS Learning Design which can be used to incorporate IMS Learning Design in your own application(s).

A set of applications, utilities, and libraries used in conjunction with commodity hobby-grade radio controlled helicopters to create an aerial robotics platform.

Coq4Eclipse is a plugin for the Eclipse Platform that provides an interface to the Coq Proof Assistant. It will support the user with syntax highlighting, search facilities, mathematical symbols, pretty-print, etc.

Providing an extremely-easy-to-use GUI for editing Openbravo ERP's language xml files, aiming for a colaborative work where a localized community (usually from the same country) works over the same files to generate a new complete translation quickly.

The Cornell Tree-Ring Analysis System. A program for several aspects of dendrochronology: measuring, indexing, crossdating, graphing, summing masters, and even drawing maps of locations of sites.

Yet another MAZE! There is going to be maze generation algorithm(s) and pathfinders who use certain algorithms to solve the maze. This project was initially a student team project at Thompson Rivers University(TRU) to demonstrate search algorithms.

CORPSE (CORPus SEarch) is a powerful search engine written in Java. The aim is to provide an efficient implementation of a word level inverted index search with various cool functions that can be used on very large corpora.

A simple java program using PDFBox and Prefuse libraries to extract text from pdf and display as a graph. Can also link words based on their contexts.

Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information

Corra [BMC Bioinformatics 2008] is a computational framework & tools for discovery proteomics using label free LC-MS and ATAQS [BMC Bioinformatics 2011] is a computational framework & tools for validation proteomics using SRM LC-MS method.