Open Source Java Scientific/Engineering Software - Page 47

A simple utility to check a dicom cdrom for patient, studies, series and images It extracts data directely from dicomdir.

The CheckCML project is a collection of modules for the production and checking of chemical experimental data represented as CML. The core CheckCML library provides classes for the checking process; tools such as OscarData allow for the production of CML

Mathematics, Chemistry and Bio-informatics semantic knowledge editor and simulation environment. It should serve as interactive science learning program or science classroom notebook and workshop.

A Java program to parse chemical names using IUPAC nomenclature. The output can be either a visualisation of the molecule, or in a form for other programs to use (e.g. CML).

Chemical Calculator that can calculate various aspects of compounds. The programs main features are: * Get information about an element * Calculate the amount of moles of an element * Calculate the Empirical and Molecular formulas of a compound

Chemical Evaluation Framework (CEF) is a molecular structure based software to assist in hazard assessment. Download requires Java 6 update 1. Source code is contained in jar files. Download contains GSH reactivity plugin.

Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .

The Chemical Manager application can be of great help to Organic Chemistry Departments. University research groups will benefit from using this application, since it was optimized for their needs. Currently, Technion Chemistry department is benefiting from it.

This application is intended to help students with the basics of chemistry. It can solve basic gas laws equations, and find the molar mass of a compound or element. These tasks allow students to cut the repetition out of basic chemistry.

CherBot is an information bot for Crossfire, Daimonin and good old plain IRC that keeps track of which players collect which items, who's been online, determines a level ranking, provides a mail system for mailing offline players, manages clans and

Cherokee is a fully extensible and scriptable automation engine for any and all java applets. To make it work for your favorite java applet the most you have to do is write is two classes.

ChiBE (Chisio BioPAX Editor) is an open source pathway editor for biological pathways in BioPAX format. ChiBE converts BioPAX graphs into process diagrams where complexes and compartments are represented with compound nodes. !!! For latest version, please see !!! http://code.google.com/p/chibe

Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage. Chipster’s ability to provide a biologist-friendly access to a powerful analysis platform is technically based on a desktop application user interface, a flexible distributed architecture, and the ability to integrate many types of analysis tools (command line, R/Bioconductor, Java, Web Services etc). The platform is generic and easily extendable to other areas, even beyond bioinformatics. For more information, please see http://chipster.csc.fi and http://genomebiology.com/1471-2164/12/

A visualization software for BioPAX files. Uses compound graphs for showing complexes and compartments. Can also export to SIF and display SIF files.

===== Project moved to https://github.com/fpetitjean/Chordalysis ===== Log-linear analysis is the statistical method used to capture multi-way relationships between variables. However, due to its exponential nature, previous approaches did not allow scale-up to more than a dozen variables. We present here Chordalysis, a log-linear analysis method for big data. Chordalysis exploits recent discoveries in graph theory by representing complex models as compositions of triangular structures, also known as chordal graphs. Chordalysis makes it possible to discover the structure of datasets with thousands of variables on a standard desktop computer. Associated papers at ICDM 2013, ICDM 2014 and SDM 2015 can be found at http://www.francois-petitjean.com/Research/ YourKit is supporting Chordalysis open source project with its full-featured Java Profiler. YourKit is the creator of innovative and intelligent tools for profiling Java and .NET applications. http://www.yourkit.com

Ciclope Astro is a Web 2.0 application to control an astronomical observatory (telescopes, cameras, domes, etc.). It contains other tools as album (folksonomy & votes), forum, news (RSS), karma system. Developed using the Google Web Toolkit framework.

Ciclope Planetarium is a web-based planetarium that provides a simulation of the sky from any location at any time and date. Developed using Google Maps API & AJAX. Available in PHP & J2EE. Integrated in the Ciclope Stars project (www.ciclope.info/stars)

Cinefile is a prototype of a category-based method of database exploration. It allows the user to identify abstract categories of films by providing examples of category members, learns to classify films as belonging or not belonging to those categories, and provides a graphical interface for exploring and comparing categories. Cinefile is designed to work with data retrieved from the Internet Movie Database (imdb.com). This data is used for classification and is the subject of the category-based analysis. Cinefile was developed by the University of Mary Washington's Computer Science department (http://cas.umw.edu/computerscience).

CircuitSmith is to be a comprehensive electronic design package being developed in Java which will include schematic capture, printed circuit board layout and any other features which I (and hopefully others) can be bothered to program.

The Citizen Privacy Service is an asynchronous component using artificial intelligence capabilities including DL decidability and first order logic provenance that provide policy decision and policy enforcement points based on the US Privacy Act of 1974.

CITYOPT mission is to optimize energy systems in smart cities. The project will create a set of applications and related guidelines that support efficient planning, detailed design and operation of energy systems in urban districts.

Clados is a java package that implements a multivector in a Clifford Algebra. Algebras (over real numbers) with any signatures may be used. A calculator and associated documentation is also included to help users learn how things work.

Now available on Google Play at <https://play.google.com/store/apps/details?id=ca.farrelltonsolar.classic> The source code is now maintained on <https://github.com/graham22/Classic> Classic Monitor is a free status monitor for Midnite solar 's, Classic 150, 200, 250 Charge Controller. It is a Read Only Program, it does not write to the Classic. The software is provided "AS IS", WITHOUT WARRANTY OF ANY KIND, express or implied. Classic Monitor is NOT a product of Midnite solar, nor do they support this application! If the app detects a Whizbang Junior current monitor, the State Of Charge will display along with a bi-directional current gauge. Other features include a calendar view of the daily power readings and a chart view of power for the last 24 hours, plus a store and forward feature to upload data to <PVOutput.org>. Basic support for the Tristar MPPT charge controller from Morningstar. Works with Android API level 10 (Gingerbread) and above.

A project to display the health of local environment on maps. Environmental data from mobile phones uploaded to a website will display CO2, VOC's, Temp. & atmospheric data & particulates. Anonymous climate data will be publicly available.

ClimateTrends is an information and analysis tool on global climate change developed by the World Resources Institute. ClimateTrends provides a comprehensive and comparable database of greenhouse gas emissions data.