Open Source Java Scientific/Engineering Software - Page 47

***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222

Trauma registry suite; Data collection application and server scripts to build trauma data warehouse and perform web-based analysis reporting. Cross-platform compatible for Windows, Apple, Unix, or Linux.

unGrid is an open source framework for distributed medical imaging. The system consists of a computing grid that harnesses idle CPU cycles from existing workstations, and a framework to execute jobs on that grid.

vtSim is a traffic data, simulation and results management environment. It has been created by the Chair for Traffic Engineering and Control, Technische Universität München (http://www.vt.bv.tum.de/).

wiigee is a gesture recognition library for accelerometer-enabled devices (e.g. Nintendos Wiimote) written in Java.

wlandscape is a tool for collecting access point data of public wireless networks ( wlan ) in order to share it with anyone. It also supports gps and visualisation with the help of topographical maps. Visit our homepage for further informations.

xAffect is a software framework for online recording, processing and storage of multi sensor data. It was developed at FZI Research Center for Information Technology, Karlsruhe, Germany. xAffect can be used as a flexible, customizable middleware between physiological sensors and applications which require online feature computation (e.g. biofeedback or affective computing). Moreover, it can also be used as a standalone application for data acquisition and visualization.

A group of useful tools for working with 802.15.4 networks. Currently includes a sniffer that interfaces with Wireshark in Windows/Linux (and maybe Mac OS X too), allowing you to do 802.15.4, ZigBee, and 6LoWPAN Sniffing.

3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.

Investigate and visualize ant-routing (or, Ant Colony Optimization)

Balie - BAseLine Information Extraction (in Java) This project is not maintained anymore.

Proyecto de investigación científica sobre teoría del caos y fractales, su desarrollo empezó en el año 2008, siendo liderado por un grupo de estudiantes y profesores de la Universidad Industrial de Santander.

BioNote is a knowledge base that combines unstructured wiki technology with structured annotation to form a collaborative environment. BioNote adds the concepts of page types and semi-structured annotation to extend the unstructured nature of wiki pages

CD++Builder is an Eclipse plug-in that integrates varied applications and utilities that aids in creating CD++ DEVS models, simulating and analyzing results. Among these applications, CD++Modeler provides a graphical editor for coupled and DEVS-Graph

A Clinical Decision Support System (CDSS) can be used for diagnosing allergic disorders. CDSS with rule based classification approaches, aid junior doctors and clinicians to diagnose and make reliable decisions. The results of an intradermal skin test is the input to the CDSS. The System predicts the presence or absence of ALLERGIC RHINITIS. The system is tailored to suit to the common allergens (inhalents and ingestants) prevalent in Chennai, South India. Intradermal Skin Test(IDST)data were collected from 872 patients who visited the Good Samaritan Kilpauk Lab and Allergy Testing Centre, Chennai, Tamilnadu, India.

COB editor is a collaborative editor for biological ontology (e.g., Gene Ontology) building. Building on the idea of modular ontology from KR research, it supports multiple people to work on the same ontology.

Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. (English, French, Spanish, Portuguese, Russian, Turkish, Georgian, and Chinese.)

It is a Client Application developed in Java that sends simultaneous OGC CSW requests to several metadata catalogues (ebRim or ISO 19115/19119 profile), processes the responses and shows them in a single web page.

A project under constant development with the aim of providing end users with a simple intuitive interface for cracking & analysing ciphers from standard types of puzzles

It uses two different solutions: - placing of circles closest to the center from the largest to smallest, see brianshaler on github https://github.com/brianshaler/Circle-Packing-in-Processing - simulation "real" world with use of a Java Physics Engine JBox2D, see http://www.jbox2d.org

Program jobman (Job Manager) glues executables written in different languages according to a given flow. The program can run executables with arguments in parallel (multiprocessed) or in loop or in any combination of them.

System software for building privacy-sensitive context-aware systems that make use of sensor data to provide useful services for end-users.

Adaboost extensions for cost-sentive classification CSExtension 1 CSExtension 2 CSExtension 3 CSExtension 4 CSExtension 5 AdaCost Boost CostBoost Uboost CostUBoost AdaBoostM1 Implementation of all the listed algorithms of the cluster "cost-sensitive classification". They are the meta algorithms which requires base algorithms e.g. Decision Tree Moreover, Voting criteria is also required e.g. Minimum expected cost criteria Input also requires to load an arff file and a cost matrix (sample arff and cost files are uploaded for users' reference) This extension uses weka for classification and generates the classification model along with confusion matrix. For given dataset and cost matrix

Cunei is a data-driven machine translation system that builds dynamic, statistical models based on instances of known translations found in a corpus.

Decimal floating point library in Java. Provides decimal floating point math for Java via a clean, easy to understand implementation. Much easier to use than Big Decimal, nearly IEEE-854 compliant. Compatible with J2ME, so it can be used on PDAs/phon