Open Source Java Scientific/Engineering Software - Page 45

Catatumbo is a project for developing a SoftPLC based on the IEC 61131 standard. The goal of this project is to provide a solution for industrial control using Java and XML technologies (for cross-platform support).

A simple rainfall runoff model.

High energy photon beam independant dose calculation

CAVOR is an engine for building apps that involve both graphic and text/numeric data. Primarily GIS is the initial focus, but consider also CAD, CASE, project management (eg PERT charts), and others. Built-in scripting, C API, also supports Tcl and Java.

CAXO (Component for Accessing XML based Objects) is mapping any xml based object to a multiline and editable tree structure. CAXO is a JComponent, and direct implementable in any swing container. In default configuration, CAXO is an xml browser or editor

The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006.

Celerity, an open-source, Java based data-flow architecture that provides high performance with fine data granuality. Celerity offers a module based programming environment, which can parrellelize across processors, machines and architectures.

Celeste is a tiny and simple Cellular Automata simulator written in Java. It is a command line application that writes an image of each simulation step. Celeste was designed to run Conway's Game of Life but other rulesets can be implemented as well. It is released under the extremely permissive WTFPL.

Help us to improve Cell Culture. We want to hear your feedback! Request new Cell Culture feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/fw Cell Culture is a highly specialized protocol-driven system designed to support development of the cell lines. Cell Culture manages activities related to the growth and maintenance of cell lines, provides stable cell lines development and incorporates laboratory methods facilitating faster and more accurate inventory lifecycle management: from the procurement of cell lines and request processing to tracking of tubes and other items in the laboratories. Cell Culture provides easy to follow, step-by-step protocols, with tips and notes and is of interest to researchers, technicians and process engineers using cell culture within the biotechnology, biomedicine and pharmaceutical industries.

The target system of this project is to develop mathematically efficient program code generator from cellml like biological models described by mathematical markup languages.

A bioinformatics tool, developed as a Cytoscape plugin, for elucidating small molecule signalling mechanisms that drive cell fate into a specific direction.

CellGIS is a wireless planning tool that uses Java and ASCII Raster maps format. It allows to implement more propagation models and funcionalities by means of plug-ins.

IDL specified API for manipulating and processing CellML 1.0 and 1.1. Includes C++ implementation. Accessible from a C++ program, or from any language for which a CORBA language mapping is available Also, a Java wrapper of the API is available.

An IDE for CellML 1.1 user models developed in UNSW as an open source project. Author: Mitchell Lanesbury 2012

Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML. Cellontro is now completely contained within the Xholon sourceforge project.

This software simulates cellular behavior based on specific rules (e.g. Game of Life or Wireworld). The UI will be replaceable and there will be a feature for importing rules from a file based on a format developed for this purpose.

Cerebrum intends to be a state of the art web 2.0 Electronic health record management solution.

Cervelletto is a neural network simulator. It uses a new neural model based on biological, neurological and psychological studies. [it's not yet completed... just give me some weeks! sorry!]

Chemical Entities of Biological Interest (ChEBI) is a freely available database of chemical compounds and other small molecular entities. WE HAVE MIGRATED TO GITHUB. To create new issues/comments, please use the following link: https://github.com/ebi-chebi/ChEBI/issues

An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.

ChainBuilder ESB is Java Business Integration (JBI) compliant open source solution for use in Service Oriented Architecture (SOA) environments. ChainBuilder ESB's graphical integration enables new and older applications to easily enter into SOA.

Chameleon is a rule-based expert system to assist farmers in semi-arid areas to prevent bush encroachment. It runs as a web-application on a Tomcat server with MySQL and is based on the Mandarax library for deduction rules and its front-end, Oryx.

UIMA solution for analysing web-server logs, that does things like analyze the user behavioral patterns in the channels followed by users from the log files, report current and the past behaviour of the visitors in selfservice systems.

Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder

Distributed phrase-based machine translation training tool based on Hadoop.