Open Source Java Scientific/Engineering Software - Page 43

CAISI is an EMR system based on Oscar but offers more features for support of integrated holistic health-care for homeless people

The code here is a parser for CALBC corpus into Java object.

CAMERA is a research environment and repository for metagenomic data

CB-Commander is a plugin based tool that tries to integrate high throughput sequencing algorithms. It allows researchers to design and execute their experiments through a user friendly interface.

Dynamic COBOL copybook parser for Java. Supports parsing and writing of application data based on parsed copybooks. Coverts COBOL types to Java types and back to COBOL types with validation.

The Unified Modeling Language (UML) is used for designing software. ArgoUML is an open source UML editor. This plugin integrates the "Context-Based Constraint Language (CCL) for Components" into ArgoUML. On Berlios we speak german - check www.cocons.or

CD++Builder is an Eclipse plug-in that integrates varied applications and utilities that aids in creating CD++ DEVS models, simulating and analyzing results. Among these applications, CD++Modeler provides a graphical editor for coupled and DEVS-Graph

A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.

The Octet-CDK interoperability package.

A Clinical Decision Support System (CDSS) can be used for diagnosing allergic disorders. CDSS with rule based classification approaches, aid junior doctors and clinicians to diagnose and make reliable decisions. The results of an intradermal skin test is the input to the CDSS. The System predicts the presence or absence of ALLERGIC RHINITIS. The system is tailored to suit to the common allergens (inhalents and ingestants) prevalent in Chennai, South India. Intradermal Skin Test(IDST)data were collected from 872 patients who visited the Good Samaritan Kilpauk Lab and Allergy Testing Centre, Chennai, Tamilnadu, India.

CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.

Project MOVED to Codehaus New location is http://esper.codehaus.org The Esper project aims to provide a general-purpose event processing facility in Java for complex event processing of real-time, high throughput data streams.

Cell Electrophysiology Simulation Environment (CESE)

Centralized External Input (CEXI) Toolkit allows large display input devices (e.g., Smart Board) to be accessed in high level languages (e.g., Java, Microsoft .NET). CEXI Toolkit removes the requirement to use low level input SDKs so programmers can dir

This is the software repository of CEqEA, the ab-intra reasoning and modelling environment

A CFML to JSP translator

This program allows you to create a transmission hologram using just a computer, a laser-printer, and an overhead transparency. This hologram will behave like one created using a laser and can be projected or viewed with a point source.

Connecting Historical Authorities with Links, Contexts and Entities. CHALICE is a historic placename gazetteer for the UK, published as Linked Data and linked to other widely-used sources of placename reference information on the semantic web.

The CHIP Cluster Generator attempts to create spatio-temporal cluster data in an automated fashion to help evaluate epidemic detection software. The spatio-temporal data will then be used to determine robustness of spatial detection algorithms.

CHIRIS (Canada Health Infoway Reference Implementation Suite) is a demonstration of Electronic Health Record (EHR) interoperability messaging created by Canada Health Infoway. The project demonstrates and proves Patient Registry interoperability messagin

Charmy is a tool for specification of Software Architectures through diagrammatic, UML-based notations, and validation of the architectural specification conformance with respect to functional requirements.

CI-Reports is helpful to generate a report of clinical trial data based CDISC SDTM. CI-Reports also provide the reports as PDF, Excel, Word, Flash, LibreOffice and RTF.

Source code for the Chemical Informatics and Cyberinfrastructure Collaboratory project.

CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for Proteomics http://www.biomedcentral.com/1471-2105/15/344/ Previously known as PIVOT (Protein Interaction Visualization and Observation Tool)

CIP-FOSS will serve as a common entry page for Free and Open Source Software developed at the International Potato Center (CIP), Lima, Peru (http://www.cipotato.org).