A quality control analysis tool for high throughput sequencing data
Near-optimal RNA-Seq quantification
Community-curated list of software packages and data resources
BBMap short read aligner, and other bioinformatic tools.
High-performance read alignment, quantification and mutation discovery
RNA coding potential assessment tool
Feature selection and deep learning modeling for omic biomarker study
Fusion gene detection pipeline bundled into a Singularity container.
Short-read de novo assembler that identifies chimeric contigs.
Somatic fusion-genes finder for RNA-seq data
City of Hope CpG Island Analysis Pipeline
Hybrid Lineage Transcriptome Explorer
tumor epigenetic database
Genome-Wide DNA Methylation Analysis with RRBS
CusVarDB generated variant protein database from NGS-datasets
Hadoop spliced read aligner for RNA-seq data
rMATS-Iso is a generalization of rMATS for complex splicing patterns.
An End-to-End Analysis Pipeline for BS-seq
Computational Suite For Bioinformaticians and Biologists
CSBB - Computational Suite for Bioinformaticians and Biologists
Genobuntu Package for Next Generation Sequencing
SNP calling, annotation and gene/transcripts expression quantification
Long read to rMATS