Search Results for "subread"

x
Sort By:

Showing 3 open source projects for "subread"

View related business solutions
  • MongoDB Atlas runs apps anywhere Icon
    MongoDB Atlas runs apps anywhere

    Deploy in 115+ regions with the modern database for every enterprise.

    MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
    Start Free
  • $300 in Free Credit Towards Top Cloud Services Icon
    $300 in Free Credit Towards Top Cloud Services

    Build VMs, containers, AI, databases, storage—all in one place.

    Start your project in minutes. After credits run out, 20+ products include free monthly usage. Only pay when you're ready to scale.
    Get Started
  • 1

    Subread

    High-performance read alignment, quantification and mutation discovery

    The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction.
    Leader badge
    Downloads: 322 This Week
    Last Update:
    See Project
  • 2

    hppRNA

    A Snakemake-based handy parameter-free pipeline for RNA-Seq analysis

    ...It starts from fastq files and will produce gene/isoform expression matrix, differentially-expressed-genes, sample clusters as well as detection of SNP and fusion genes by combination of the state-of-the-art software. The first version handles protein-coding genes, lncRNAs and circRNAs and includes six core-workflows such as (1) Tophat - Cufflink - Cuffdiff; (2) Subread - featureCounts - DESeq2; (3) STAR - RSEM - EBSeq; (4) Bowtie - eXpress - edgeR; (5) kallisto - sleuth; (6) HISAT - StringTie - Ballgown. Please cite the following paper when using this package: Dapeng Wang. hppRNA—a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples. Briefings in Bioinformatics, Volume 19, Issue 4, 20 July 2018, Pages 622–626.
    Downloads: 3 This Week
    Last Update:
    See Project
  • 3
    THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread PLEASE UPDATE YOUR BOOKMARK!
    Downloads: 0 This Week
    Last Update:
    See Project
  • Previous
  • You're on page 1
  • Next

Related Searches

Related Categories

MongoDB Logo MongoDB