The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.

Features

  • Simple Tools
  • Fast algorithms
  • Generic methods when possible
  • C-programs for elementary procedures
  • Auxiliary Perl tools to perform format conversion tasks

Project Samples

ChIP-Seq Screenshot 1 ChIP-Seq Screenshot 2 SGA-format

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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ChIP-Seq Web Site

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Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Advanced End Users, Science/Research

User Interface

Command-line, Web-based

Programming Language

C, Perl

Database Environment

Flat-file

Related Categories

Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2008-11-06
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