CSBB-v3.0

CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX.

Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience.

Features

RNA-Seq
ChIP-Seq
ATAC-Seq
Normalization
Differential Expression
Public Data Processing
End to End Pipelines
Open Source
Visualization
Bioinformatics

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow CSBB-v3.0

CSBB-v3.0 Web Site

Other Useful Business Software

Go from Code to Production URL in Seconds

Cloud Run deploys apps in any language instantly. Scales to zero. Pay only when code runs.

Skip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.

Try it free

Rate This Project

User Reviews

Be the first to post a review of CSBB-v3.0!

Additional Project Details

Operating Systems

Linux, Mac

Intended Audience

Science/Research

Programming Language

Perl

Related Categories

Perl Build Tools, Perl Bio-Informatics Software

Registered

2018-05-09

Similar Business Software

Bitrise

Bitrise is a CI/CD platform built for mobile development, helping teams speed up builds, automate testing, and deliver high-quality apps faster. It supports native languages like Swift, Objective-C, Java, and Kotlin, as well as cross-platform frameworks including React Native, Flutter, Xamarin,...

See Software
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Bioconductor

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to...

See Software
LatchBio

Stop wresting with cloud infrastructure and broken informatics tools. Start discovering biological insights today. Scientific discovery is bottlenecked by the fragmentation of tooling across biology and bioinformatics teams. We built a harmonized bioinformatics platform between wet lab and dry...

See Software
Pluto

Since its founding in 2021 from the Wyss Institute at Harvard University, Pluto has become a trusted partner of life sciences organizations around the country ranging from biotech start-ups to public biopharma companies. Our cloud-based platform gives scientists the ability to manage all of...

See Software