CusVarDB

CusVarDB is a windows based tool for creating a variant protein database from Next-generation sequencing datasets. The program supports variant calling for Genome, RNA-Seq and ExomeSeq datasets. The program performs mainly 4 modules
1. Align the datasets with reference database
2. Perform the variant calling using Genome Analysis Toolkit (GATK)
3. Annotate the variant using ANNOVAR
4. Create the variant protein database

Apart from the main modules, the program also supports additional functions such as
1. Download the SRA
2. Convert the SRA file to fastq file format
3. Download the annotation (ANNOVAR) database and Dry-run concept to customize the commands

Executables are available at http://bioinfo-tools.com/Downloads/CusVarDB/V1.0.0/

Test dataset is available at http://bioinfo-tools.com/Downloads/CusVarDB/V1.0.0/test_dataset.rar

Features

Custom variant protein database creation
Download Annovar database using GUI
GUI to perform variant calling and annotation
Dry-run concept to customize the workflow and paramerers

Project Samples

Project Activity

See All Activity >

License

Creative Commons Attribution License

Follow CusVarDB

CusVarDB Web Site

Other Useful Business Software

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Start Free

Rate This Project

User Reviews

Be the first to post a review of CusVarDB!

Additional Project Details

Operating Systems

Windows

User Interface

.NET/Mono

Programming Language

Related Categories

C# Bio-Informatics Software

Registered

2019-11-03

Similar Business Software

Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Illumina DRAGEN Secondary Analysis

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30...

See Software
VarSeq

Simple, fast, and repeatable variant analysis software for gene panels, exomes, and whole genomes. VarSeq is an intuitive, integrated software solution for tertiary analysis. With VarSeq you can automate your workflows and analyze variants for gene panels, exomes, and whole genomes....

See Software
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench is a powerful solution that works for everyone, no matter the workflow. Cutting-edge technology and unique features and algorithms widely used by scientific leaders in industry and academia make it easy to overcome challenges associated with data analysis....

See Software