CusVarDB

CusVarDB is a windows based tool for creating a variant protein database from Next-generation sequencing datasets. The program supports variant calling for Genome, RNA-Seq and ExomeSeq datasets. The program performs mainly 4 modules
1. Align the datasets with reference database
2. Perform the variant calling using Genome Analysis Toolkit (GATK)
3. Annotate the variant using ANNOVAR
4. Create the variant protein database

Apart from the main modules, the program also supports additional functions such as
1. Download the SRA
2. Convert the SRA file to fastq file format
3. Download the annotation (ANNOVAR) database and Dry-run concept to customize the commands

Executables are available at http://bioinfo-tools.com/Downloads/CusVarDB/V1.0.0/

Test dataset is available at http://bioinfo-tools.com/Downloads/CusVarDB/V1.0.0/test_dataset.rar

Features

Custom variant protein database creation
Download Annovar database using GUI
GUI to perform variant calling and annotation
Dry-run concept to customize the workflow and paramerers

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License

Creative Commons Attribution License

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Additional Project Details

Operating Systems

Windows

User Interface

.NET/Mono

Programming Language

Related Categories

C# Bio-Informatics Software

Registered

2019-11-03

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