Fast ribosomal RNA detector and annotator
A Package for Identification of Long Inverted Repeats in Genomes
Predict and score RNA secondary structures
RNA editing detection by NGS data
Complete annotation of small RNA datasets from NGS
Hadoop spliced read aligner for RNA-seq data
Check for selection of RNA secondary structure
rMATS-Iso is a generalization of rMATS for complex splicing patterns.
A Snakemake-based handy parameter-free pipeline for RNA-Seq analysis
miRPlant: An Integrated Tool for Identification of Plant miRNA
RatTransc: a rat long noncoding RNA database
ALDB: a domestic-animal long noncoding RNA database
A powerful method for nonlinear dependence of two continuous variables
MiRDeep*
Primers Design Tool & primers Database for Small non-coding RNAs
Differential gene expression from exon expression RNA-Seq
Algorithm on Spark for aligning multiple similar DNA/RNA sequences
a A suite designed to study mRNAs, miRNAs and circRNAs
Computational Suite For Bioinformaticians and Biologists
CSBB - Computational Suite for Bioinformaticians and Biologists
Comprehensive alternative splicing hunting
SNP calling, annotation and gene/transcripts expression quantification