spark-msna

Algorithm on Spark for aligning multiple similar DNA/RNA sequences

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Last Update: 2018-07-05

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The algorithm uses suffix tree for identifying common substrings and uses a modified Needleman-Wunsch algorithm for pairwise alignments. In order to improve the efficiency of pairwise alignments, an unsupervised learning based on clustering technique is used to create a knowledge base to guide them.

Features

Multiple sequence alignment
Suffix trees
Unsupervised Learning
Needleman–Wunsch algorithm
DNA/RNA sequences, MapReduce

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2018-05-30

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