spark-msna

Algorithm on Spark for aligning multiple similar DNA/RNA sequences

Brought to you by: vineethavishnu

Downloads: 0 This Week

Last Update: 2018-07-05

Add to Preferred Sources

The algorithm uses suffix tree for identifying common substrings and uses a modified Needleman-Wunsch algorithm for pairwise alignments. In order to improve the efficiency of pairwise alignments, an unsupervised learning based on clustering technique is used to create a knowledge base to guide them.

Features

Multiple sequence alignment
Suffix trees
Unsupervised Learning
Needleman–Wunsch algorithm
DNA/RNA sequences, MapReduce

Project Activity

See All Activity >

Follow spark-msna

spark-msna Web Site

Other Useful Business Software

$300 Free Credits to Build on Google Cloud Icon

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of spark-msna!

Additional Project Details

Registered

2018-05-30

Report inappropriate content

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Recommended Projects

NeedlemanWunsch
Fast global sequence alignment for the masses!
JAligner
JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
baba
BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
methylr
a single shiny solution from sequencer data to pathway analysis
wxGenebee
The set of tools for biopolymer sequence analysis together with GUI to work with biopolymer sequence databases. The tools include pairwise and multiple alignment, philogenetic tree construction and other.