Search Results for "rna"
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Showing 2 open source projects for "rna"
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GenomeScanner
GenomeScanner displays tag data obtained from Chip-Seq and RNA-Seq.
The "Genome Scanner" is a program written to display tag data obtained from ChIP-Seq and RNA-Seq experiments. Programs already exist to do this job, but the research group here at NYU needed to explore different methods for scoring tag peaks and to visualize the results. "Genome Scanner" (GS) was written to be light-weight, fast and easily adapted to varied display tasks. The package also contains software to plot KM survival curves for patients based on gene expression data from tumor... -
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.
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