mirplant

please cite:
An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275.

We will create index for you if you tell us your interested plants (j.an@qut.edu.au).

Features

java source code "miRPlant.zip" can be found clicking "Browse All Files" on the right corner of this windows. Netbeans IDE was used
speeded up in v4, the command line version can be found by clicking "Browse All Files"
bug fixed. in v2, the read count was incorrect in xxxx.known_miR.result file, when the inputted bam file was generated in BWA etc.
bug fixed. in v1, exception appeared when clicking "save image" in the popup window In Mac.

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2014-01-06

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