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mirPRo

Tool for miRNA-seq analysis in C++

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Description

mirPRo is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in single-end RNA-seq data and provide useful functions such as IsomiR detection and "arm switching" identification, miRNA family quantification, and read cataloging in terms of genome annotation. mirPRo only works for species that has reference genome.

[1] Who are we?

Please visit our website http://bioinfolab.miamioh.edu

[2] How to cite mirPRo?

Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA, Rio-Tsonis KD and Liang C (2015) mirPRo - a novel standalone program for differential expression and variation analysis of miRNAs. Sci Rep, 5:14617. http://www.nature.com/articles/srep14617

[3] mirPRo user manual

For user manual, please visit the Wiki page of this website.

[4] mirPRo Q&A

For Q&A, please visit the Blog page of this website.

[5] mirPRo bug report

You can report a bug as a Ticket request. Or, you can start a topic session in the Discussion webpage of this website.

mirPRo Web Site

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Additional Project Details

Registered

2015-05-27

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