OmnibusX
In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate biological datasets.
Our platform is built with data accessibility at its core. With just a few clicks, you can gain seamless access to extensive, high-dimensional biological datasets, including bulk RNA-seq, single-cell RNA-seq, scATAC-seq, spatial RNA-seq, and metagenome-seq. This allows you to focus less on data wrangling and more on analysis and discovery.
Our integrated standard processing pipeline includes the latest tools for standard data processing. From normalization and batch correction to PCA, t-SNE, UMAP, clustering, cell type prediction, TCR/BCR, genome browser, and beyond, our pipeline is designed to streamline your workflow and provide you with reliable, reproducible results.
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Platforma
Platforma is a no-code bioinformatics software that converts raw next-generation sequencing (NGS) data into insights. It offers a user-friendly interface with modular, no-code "blocks" for complex analysis tasks like immune repertoire, single-cell, and gene expression data. Building on the legacy of its predecessor, MiXCR, Platforma also enables AI-powered selection for antibody/TCR candidates. The platform is designed to be accessible to scientists without a bioinformatics background, allowing for scientists to take control of their own discoveries and reduce time to insight.
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Cellenics
Turn your single-cell RNA sequencing data into meaningful insight with Cellenics software. Biomage hosts a community instance of Cellenics, an open source analytics tool for single-cell RNA sequencing data that has been developed at Harvard Medical School. It enables biologists to explore single-cell datasets without writing code and helps scientists and bioinformaticians to work together more effectively. It takes you from count matrices to publication-ready figures in just a few hours and can be integrated seamlessly with your workflow. It’s fast, interactive, and user-friendly. And it’s cloud-based, secure, and scaleable. The Biomage-hosted community instance of Cellenics is free for academic researchers with small/medium-sized datasets (up to 500,000 cells). It’s used by 3000+ academic researchers studying cancer, cardiovascular health, and developmental biology.
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Nygen
Nygen is a cloud-based single-cell RNA-seq (scRNA-seq) and multi-omics data analysis and discovery platform designed to let researchers upload, explore, visualize, analyze and interpret complex cellular datasets with an intuitive, no-code interface that supports drag-and-drop workflows and advanced scientific analysis without requiring programming expertise; it combines Nygen Analytics for rapid, reproducible scRNA-seq exploration with collaborative dashboards and publication-ready outputs, Nygen Database for accessing and hosting curated single-cell datasets to accelerate research and comparative studies, and Nygen Insights, an AI-augmented tool that delivers highly accurate cell annotations, in-depth disease impact analysis and tailored biological insights; it supports a wide range of data formats, integrates public data, enables secure cloud-based collaboration, and provides features like literature-linked evidence and biomarker-focused analyses.
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