PLEKv2
PLEKv2: predicting lncRNAs and mRNAs
PLEKv2: predicting lncRNAs and mRNAs based on intrinsic sequence features and the Coding-Net model
INSTALLATION
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We upgraded PLEK to PLEKv2. All you need is RNA sequences (fasta file).
Steps:
1. Download PLEK.2.1.tar.gz from * and decompress it.
$ tar zvxf PLEK.2.1.tar.gz
2. Compile PLEK2.1
$ cd PLEK2.1
3. decompress Coding_Net_kmer6_orf.h5.bz2 model
$ bunzip2 Coding_Net_kmer6_orf.h5.bz2
4. decompress Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 model
$ bunzip2