Showing 5 open source projects for "plek"

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  • 1

    PLEK

    predictor of long non-coding RNAs and mRNAs based on k-mer scheme

    INSTALLATION Pre-requisite: 1. Linux 2. C/C++ compiler (i.e. gcc, g++) 3. Python 2.5.0 or later versions (http://www.python.org/) Steps: 1. Download PLEK.1.2.tar.gz from https://sourceforge.net/projects/plek/files/ and decompress it. $ tar zvxf PLEK.1.2.tar.gz 2. Compile PLEK. $ cd PLEK.1.2 $ python PLEK_setup.py USAGE python PLEK.py -fasta fasta_file -out output_file -thread number_of_threads -minlength min_length_of_sequence -isoutmsg 0_or_1 -isrmtempfile 0_or_1 Examples: 1. $ python PLEK.py -fasta PLEK_test.fa -out predicted -thread 10 2. $ python PLEK.py -fasta PLEK_test.fa -out predicted -thread 10 -minlength 150 We upgraded PLEK to PLEKv2.: https://doi.org/10.1186/s12864-024-10662-y Aimin Li, Haotian Zhou, Siqi Xiong, et al. ...
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    Downloads: 15 This Week
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  • 2

    PLEKv2

    PLEKv2: predicting lncRNAs and mRNAs

    PLEKv2: predicting lncRNAs and mRNAs based on intrinsic sequence features and the Coding-Net model INSTALLATION ------------- We upgraded PLEK to PLEKv2. All you need is RNA sequences (fasta file). Steps: 1. Download PLEK.2.1.tar.gz from * and decompress it. $ tar zvxf PLEK.2.1.tar.gz 2. Compile PLEK2.1 $ cd PLEK2.1 3. decompress Coding_Net_kmer6_orf.h5.bz2 model $ bunzip2 Coding_Net_kmer6_orf.h5.bz2 4. decompress Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 model $ bunzip2 Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 USAGE Python PLEK2.py -i fasta_file -m model(ve: vertebrate , pl: plant) Examples: $ python PLEK2.py -i test.fasta -m ve Aimin Li, Haotian Zhou, Siqi Xiong, Junhuai Li, Saurav Mallik, Rong Fei, Yajun Liu, Hongfang Zhou, Xiaofan Wang, Xinhong Hei, Lei Wang. ...
    Downloads: 10 This Week
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  • 3
    .... <<<<<<<<<<<< >>>>>>>>>>>> LET OP: Update: 11-11-2015 wmpoint.eu heeft 'oude' scripts (die nog gewoon onderhouden worden) verwijderd. Ben op zoek naar een nieuwe locatie (een echte website) voor het script. LET OP: Update: 12-11-2015 Een goed nieuwe plek gevonden op www.ictscripters.com. https://www.ictscripters.com/filebase/Entry/225-Voetbal-nl-Ripper/
    Downloads: 2 This Week
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  • 4
    De nieuwe jongeren plek
    Downloads: 0 This Week
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  • 5
    Juego basado en RPG MAKER XP. Jack es un joven chico que vive en Esperia, un pueblo de Taria. En taria gobierna un malvado rey llamado Plek. Ese rey saquea a la gente y les convierte en esclavos. Jack y sus amigos lucharan para conseguir la paz en Taria.
    Downloads: 0 This Week
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