Open Source Java Scientific/Engineering Software - Page 32

Um simples software de navegação 3D, desenvolvido em Java.

Java-based general aviation flight planning software

A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).

Tutorials and help: http://abc-map.fr New version coming soon ! https://github.com/remipassmoilesel/abcmap2

AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.

AbuGraph is a freely available Java application for the layout and visualization of directed graphs. Bound to a TCP port, it supports dynamic graph creation receiving commands from a telnet console or another third party application.

Error-corrector for pyrosequenced amplicon reads.

The Accelerator Markup Language (AML) / Universal Accelerator Parser (UAP) project will develop an XML based format for describing high energy particle accelerators along with associated software to convert lattice files to a standard internal struct

Accent (Advanced Component Control Enhancing Network Technologies) is a comprehensive tool suite that interfaces a variety of communications systems and allows these systems to be controlled through goals (high-level user aims) and policies (lower-level system rules). Accent has been applied to the domains of: o Call Control: for telecommunications, particularly call control in Internet telephony o Home Care: for home automation and telecare, particularly for domestic appliances and devices to support home care o Sensor Networks: sensor networks, particularly managing wind farms However, the approach is generic and extensible for managing other kinds of systems. Accent is essentially software. As most of Accent in in Java, it needs at least a Java Runtime Environment but more likely a Java Software Development Kit. To interact with the real world, Accent needs relevant hardware such as a communications server (softswitch) or home automation equipment.

A Java servlet & JSP web mapping frontend for ESRI ArcIMS maps. This project is an alternative to the standard ArcIMS HTML viewer, featuring a cleaner interface, better measuring, and pdf export capabilities.

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.

Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. AIS comes with self-service BI capabilities enabling end users to make the data-driven decision at the right time, all with minimal IT dependency. Tightly integrated user and role management ensure correct information distribution that prevents unauthorized access to information, collaboration is ever so easy with AIS that people with no BI knowledge can start real-time collaboration in minutes. AIS 2 is also available from the website http://activeintelligence.co.uk/download

Active Networking provides a framework in which executable code within data packets can execute upon intermediate network nodes. The goal of this research is to develop active networks that are capable of predicting their own behavior and to use this ca

Runtime integration of ActiveBPEL engine into Eclipse BPEL Designer. Allows users to start and stop ActiveBPEL instances from within Eclipse BPEL Designer as well as to deploy BPEL processes.

Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification.

A software called Activity Predictor is developed using Java TM programming language. The Activity Predictor calculates activities, exposure rates and gamma spectra of activated samples for NAA experiments. The calculation procedure for predictions involve both analytical and Monte Carlo methods. The Activity Predictor software is validated by a series of activation experiments. It has been found that this software calculates the activities and exposure rates precisely. The software also predicts gamma spectrum for each measurement. The predicted spectra agreed partially with measured spectra. This software has a XML database which includes nuclear data for frequently used materials in NAA. Neutron Neutron cross section data from ‘‘ Tables for Neutron Activation Analysis’’ , photon cross section data from Berger and Hubbell’s XCOM photon cross sections database [ 2], and isotope decay from from Lund/LBNL database are included in this database.

Physics simulation toys in Java. The focus is on systems simulation:mostly guidance/navigation systems, but also including hydraulic, electrical and life-support.

The AdPreqFr4SL learning framework for Bayesian Network Classifiers is designed to handle the cost / performance trade-off and cope with concept drift. Our strategy for incorporating new data is based on bias management and gradual adaptation. Starting with the simple Naive Bayes, we scale up the complexity by gradually updating attributes and structure. Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we adapt the structure. The method for handling concept drift is based on the Shewhart P-Chart. Project homepage: http://adpreqfr4sl.sourceforge.net

Adamant is a java application for annotation of microarray array designs. The software enables MIAME-compliant annotation of sequences spotted onto arrays and can produce output files in MAGE-ML and other data formats used by public microarray data repos

A knowledgment management system written in Java under JBoss 4.2.3 Server, with richfaces 3.3.0BETA4. Including fileconversion from html to pdf and rich:editor component without special syntaxing.

This project is an easy to use Java application framework, providing enough functionalities to be fully usable. It has been developed for a scientific articles library software, but I hope it's sufficiently generic to be usable on different contexts.

AgED performs automatic feature extraction from your image data and allows for their visualization and management. AgED relies on Elliptic Fourier Transcriptors to extract features from large quantities of image data. These features can then be visualized and you can evaluate them in a statistical manner. This type of analysis is particularly worthwile in the assessment of biological experiments. Elliptic Fourier Descriptors have been applied in a large range of applications in biology. Examples include the distinguishing of leaf shapes, fish sex, organ size and so forth. AgED is intended for scientific use only. Use and distribution of this technology is subject to the Java Research License included herein. AgED comes with absolutely no warranty.

Agent Systems Library

Computational modelling is a interdisciplinary field spanning many techniques and programming languages. AgenTools is a project dedicated to establishing increased modularity in scientific computing packages and a portal linking to other existing project

Agent-based Traffic Simulator as study work.