Open Source Java Scientific/Engineering Software - Page 36

A 2D simulation server for the ASURO robot written in JAVA. The server offers the ASURO 2.8.1 Lib as an interface for clients via TCP/IP. The simulation part is based on the phys2d engine. Example clients are written for JAVA and C.

Atarrabi is a web-based workflow application used for preparing meteorological research data for persistent identifier registration. This software will not run out-of-the-box. Please visit our web site and contact us to learn more.

This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO, Illumina call files) * work with genetic maps ...

A biological data warehouse that locally stores and integrates biological sequences, molecular interactions, homology information, functional annotations of genes, and biological ontologies. Website: http://bioinformatics.ubc.ca/atlas

Java framework based on jAudio feature extraction algorithms, but lightweight and easy for use. Support mp3, wav, aiff, aifc, au and snd files. Can extract 28 features.

A java based neural network framework. The Auratus network is built around an XML messaging system, allowing for a complete MVC design. Additionally, Auratus networks are constructed and at the node/edge level, allowing for advanced topologies.

A phologenetic supertree construction/assembly tool using triplet similarity as the objective function.

Modified version of AutoGrow, autogrow.ucsd.edu/ , with a mutation script added in the class files, and a global change of the defined mutation point from Hydrogen atoms to Calphas, to allow placement of Amino Acids. Deposited are 3 versions, used for my PhD Thesis. These allow for mutation of short 2-15 amino acid peptides, and associated screening of these using AutoDock or AutoDock Vina, allowing for 8 CPU systems to screen 10K peptides a day or 1-2K with flexible residues added in. A detailed method for determining the peptide ligand for any sequenced and modeled T cell receptor will be published and link added at some point. These scripts are written quickly in a couple weeks to meet a task and could be re-written more eloquently. I may or may not work on this project again, the goal would be to introduce amino acids into any protein in openCL to allow automated design on GPU's.Limits-The standard PDB codes used slightly modified, proline not at angles, peptide shld be linear,

PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest). AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets. Primers may be designed using information from any of the UCSC hosted genomes and primers can be made to avoid overlapping SNPs for genomes where SNP databases are available.

Automatic program to create keyboard layouts similar to the dvorak layout in any other language.

Simple use of javadbf (http://javadbf.sarovar.org) class. Allows import / export files from a Siemens Step7 project . Allow to put your logic files under SVN o similar (easy and fast!) NEW VERSION IS READY, NO CONFIGURATION NEED!

AutoMATRIX is a tool to predict key transcription factors in microarray experiments.

AutoSummary uses Natural Language Processing to generate a contextually-relevant synopsis of plain text. It uses statistical and rule-based methods for part-of-speech tagging, word sense disambiguation, sentence deconstruction and semantic analysis.

Autodrive is written to automate tasks within a large soa installation, ranging from gathering information to a metadata repository, over testing software solutions, and deploying prebuild software artifacts.

The Automated Life Ecosystem Simulator is a microbe simulation environment developed in Java.

Automated supernova finder is a software package to automatically compare FITS images to a nominated reference image with the aim of finding supernovae or other optical transient phenomena.

The project includes a software, which uses an AI for autonomous sailing of a small sailing boat, equipped with various sensors and GPS. There are various methods for evaluation and improvement of sensor data, route planning, collision avoidance.

Web service providing access to the Autshumato Machine Translation (MT) and other Moses Statistical MT systems. Functionality includes: - Automatic sentence, document, web page translation. - Improvements for translations. - Reviewer requests and interface to review improvements - Connection to the latest version of the Autshumato ITE, Post Edits done on inserted automatic translations are automatically submitted to the MTWS. - Administration interface to add users, reviewers and MT systems. - Exposed API for all of the services. - Ability to log into the system using your Google or Facebook ID. - All requests are logged by IP. Licensed under the GNU GPL v3 (or later): http://www.gnu.org/licenses/gpl-3.0.txt

It's a utility application for updating and integrating translation memories, created by the Autshumato ITE, over a network. Licensed under the TMate Open Source License and free to download and be used by anyone.

Auvai is a Java API and Java Swing based application for Text to Speech conversion of Unicode Tamil. Future direction of this API and application is to support Text to Speech conversion for all "Indic" languages.

Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.

Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)

AvroraZ is the branch of Avrora from the Cork Institute of Technology, Cork, Ireland aimed at improving MicaZ support thus enabling IEEE 802.15.4 compliant emulations

Aware.MPS is a maintenance productivity suite designed to measure productivity, set productivity goals, and track progress toward those goals. It is best combined with a CMMS system to monitor productivity and suggest areas for productivity improvement.

This is a non-causal non-linear encryption system that cannot be cracked by the von-neuman architectures available today