Open Source Java Scientific/Engineering Software - Page 34

PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.

***** Discontinued (direct part of NetLogo now (since NL v6)!) ***** This extension connects the simulation platform NetLogo with the statistical analysis software R. It adds some new primitives to NetLogo, which offers the interchange of data with R and the call of R functions from NetLogo. See the documentation for more details. There is also the possiblity to open an Interactive R Shell from NetLogo. _______________________________________ Please have also a look on our info page about other NetLogo extensions at http://www.uni-goettingen.de/en/315075.html. _______________________________________ Please cite this software in scientific publications as: Thiele, JC; Grimm, V (2010). NetLogo meets R: Linking agent-based models with a toolbox for their analysis. Environmental Modelling and Software, Volume 25, Issue 8: 972 - 974

Java-RFID is a Java programming library for RFID. Its goal is to create an RFID kit-agnostic API ala JDBC. Thus, programmers will write the same code to communicate with any RFID kit. It has been tested with Texas Instruments and Microchip RFID kits.

RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.

RobBX - is a first in the world DIY Arduino constructor based from IQBX. Difference from prototype, RobBX has complete conception witch includes: a complete STL 3D-models with OpenSCAD sources; a special schemes and electronics connections; and powerfull Arduino firmware for ESP32 based on WiFi AP Server, connection to it from mobile device give a controller, programmable from IDE (on Blockly). Robb - is a low cost constructor, but it powerful for STEAM education.

RunCC is a new kind of parsergenerator that generates parsers and lexers at runtime. Source generation is only optional. It features the absence of any cryptography. Although intended for small languages, it comes with Java and XML example parsers.

This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.

SILENT is a Scratch modification that interfaces with LEGO MINDSTORM NXT 2.0 robot. It's based on Scratch 1.4.2, developed in JAVA, Squeak and Bash scripting. It's supported by Linux and Windows XP/7, in which it was tested. It required JAVA>=6. Easy to setup and easy to learn! Please leave your review to help me to improve it!

Security Officers Management and Analysis Project (SOMAP) is all about defining security management work methods and supplying Security Officers with tools to do their job more efficient and following standards easily.

ScreeningAssistant 2 is a modular software dedicated to perform various simple and advanced chemoinformatics analysis around chemical libraries.

SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.

SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging on experience from more than 20 years of information retrieval.

SimCampus is a software programmed in java. The goal of this project has been the development of a simulation tool for recommendation system of extracurricular activities on a university campus. This simulation provides the advantage to avoid problems that may develop during a real implementation and operation of this system. It is simulated a recommendation system of extracurricular activities for students of a university campus considering their free time (time between classes) and preferences (interest, hobbies). It is presented a model of the UCAM university campus but the tool can be extrapolated to any other university campus because it is fully configurable. The developed tool can also optimize the number of elements necessary for recommendation system and the total number of students who may be informed until the system reaches its saturation level.

Pipes is a desktop system which analyzes an AutoCad(TM) drawing of a sprinkler system, checks for flaws and after these are eliminated, adds the size/diameter labels to the drawing. Tutorial: http://users.norwoodlight.com/janh/wink/autopipes-entry.htm

GNAT is an open source, platform-independent MATLAB based toolbox. It is written in MATLAB and Java. It has been tested in Windows (Windows 7), Linux (Ubuntu), and Mac OS (X Lion) platforms. The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). The second version of this software (GNATv2beta.zip) upgrades the original GNAT program with additional features that are geared towards incorporating glycan-structure experimental data into the simulation environment. For information about GNAT installation and usage, please see the GettingStarted.pdf file enclosed in the package. To cite GNAT: [1] Gang Liu, Apurv Puri and Sriram Neelamegham, Glycosylation Network Analysis Toolbox (GNAT): a MATLAB based environment for systems glycobiology, Bioinformatics 2013 29: 404-406

This tool provides the means for manual segmentation of gray scale images.

Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of TraceTuner, which support mixed base calling, have been used by the research community, the private biotech sector, and the U.S. government as components of different variant detection, genotyping and forensic software applications (e.g. Applied Biosystems SeqScape, Paracel Genome Assembler, MTexpert, etc.).

By using a neural net from neuroph.org with the programmlanguage Java, you can change the net by this software. Easy watch it on the screen and move the values up or down. More or less value at the output neurons. Saving, Loading from different .nnet`s. Adding comments. Changing the visible output neuron Setting wished input neurons to get visible. A small fast and easy weight version and a continuing version, which should get involved in the neuroph project.

UML transformation tool; developed in Java and XSLT; Runs on any java 1.3+ platform. Environment for code generation from UML models, based on XMI, e.g. to J2EE, webservices, xml schema; New generators (xslt/java) can be plugged in. www.modelbased.net

An easy-to-use tool, to foster a model driven architecture.

This app converts length, temperature, and fluidic volume.

VMS Draw provides general utilities (e.g. normalization, conversion, and other manipulations of several spectra at the same time) and a flexible graphical user interface (GUI) for an easy use by non-specialists which allows a seamless flow of information between experimentally and theoretically oriented researchers. Finally, it permits effective interactions with other electronic structure codes [e.g., nuclear magnetic resonance (NMR), microwave] even if Gaussian 16 offers the widest set of methods for computational spectroscopy.

Wandora is a general purpose information extraction, management, and publishing environment based on Topic Maps and Java. Wandora has several data storage options, rich data extraction, import and export capabilities and embedded server.

Implementation of an OGC Web Map Service, primarily for serving images dynamically generated from NetCDF data files (although other file formats can also be handled). Also an AJAX web mapping interface based on OpenLayers.