Open Source Java Scientific/Engineering Software - Page 31

XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.

In silico experiments. Express Taverna's workflows using XQuery. Integrates with Taverna, provides automated XQuery generation from SCUFL. A standard Taverna processor that runs XQuery. Easy XML transformations inside Taverna workflows.

XMPP Web Services for Java (XWS4J) is an implementation of machine to machine communication over XMPP. The communicated content is encoded in XML, according to customized definitions of input and output in W3C XML Schemata.

Software for multilingual content analysis

An Interactive Fiction Player written for Java Virtual Machine. It implements the Z-machine and Glulx specifications and can be used either standalone or as an applet. The Z-Code/Glulx interpreter runs adventures made by Infocom and contemporary Inte

The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.

EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a single file can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. Among other things, this header allows the files to be portable across systems with different endianess.

Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.

gattMath is a educational math (graphical) program that show some concepts behind Integral and Differential Calculus, like Riemann, Simpson, Darboux, Trapezoid, Monte-Carlo integration, derivative, antiderivative, tangent,..., and sure a plotter.

The Community Edition (gvSIG CE) is a fork of the gvSIG desktop GIS project (http://www.gvsig.org). It is open to external contributors and fully community-driven. Our official releases are designed to be portable and include all necessary binaries for Linux, Mac OS X and Windows. No installation necessary: Just download, unpack and run!

HaikuVM has been started for hobbyists who develop applications for ARDUINO to open the world of JAVA and leJOS. Yes, you can program an ARDUINO with JAVA! HaikuVM is so small that it even runs on an atmega8 (and the ASURO robot). And yes, you can program an ASURO robot with JAVA! And since version 1.4.0 the RCX lego brick.

jAudio is a project implementing a number of common feature extraction algorithms for analyzing audio in java. Output is either in Weka's ARFF format or the ACE format. Can be used either as a GUI application, command-line application, or embedded. The primary repository is on github (dmcennis) which pushes to this projects github repository.

jgnuplot is a Java library for interfacing with the gnuplot plotting package which outputs to X11, PostScript, PNG, GIF and other formats.

A Java library to facilitate SED-ML support for systems biology applications to read, validate, edit, and write SED-ML documents in compliance with MIASE guidelines. Also contains modules to execute simulation tasks and produce outputs. This project also contains the SED-ED editor application for SED-ML.

Plane frame static and dynamic analysis

The linkFlow computer software program enables the user to perform civil hydraulic design tasks in a manner similar to a calculator. Vegetated and reinforced channels of any section can be designed using allowable shear and variable n values. c 2010

SeqTRACS is a Laboratory Information Management System for tracking, organizing, and accessing sequencing requests and ABI trace files produced by a centralized sequencing core facility. Trace files are tracked in a database and can be retrieved by users

tinyTiM is a small and lightweight implementation of the Topic Maps API (TMAPI). The engine is implemented in Java.

[Introduction] xSmbus-m01 is not only a Java API, but also a program that can be executed separately. The following are its function options: Need to be executed at the command prompt, java -jar /YourPath/xSmbus-m01-1.0p.jar Help - list the parameter table Verification - verify that the product is working properly Test - used for system maintenance, in advance Check - determine if there is a device on the I2C location Scan - search in the range of 00-FF, search out on the I2C bus all devices Interactive - enter interactive mode File - You can use the executable script to attach files Reset - restart xBridge-M01 You may refer to xBridge that is based on this API https://xbridge-m01.doidx.com You can buy the product from: - China, https://shop255163877.taobao.com - Taiwan, you can buy on https://www.ruten.com.tw/user/index00.php?s=doidx - World-wide, eBay, https://www.ebay.com/str/doidx

AbuGraph is a freely available Java application for the layout and visualization of directed graphs. Bound to a TCP port, it supports dynamic graph creation receiving commands from a telnet console or another third party application.

A high-performance implementation of the BACnet I/P and MS/TP protocol written for Java (minimum version 1.5) by Infinite Automation Systems. Supports all BACnet services and full message segregation. Can be used for field devices or for control platforms. For commercial licenses contact https://infiniteautomation.com/bacnet4j-open-source-bacnet-library/ The most recent code is here: https://github.com/infiniteautomation/BACnet4J For support see: https://forum.infiniteautomation.com/category/12/bacnet4j-general-discussion

Proyecto de investigación científica sobre teoría del caos y fractales, su desarrollo empezó en el año 2008, siendo liderado por un grupo de estudiantes y profesores de la Universidad Industrial de Santander.

A Clinical Decision Support System (CDSS) can be used for diagnosing allergic disorders. CDSS with rule based classification approaches, aid junior doctors and clinicians to diagnose and make reliable decisions. The results of an intradermal skin test is the input to the CDSS. The System predicts the presence or absence of ALLERGIC RHINITIS. The system is tailored to suit to the common allergens (inhalents and ingestants) prevalent in Chennai, South India. Intradermal Skin Test(IDST)data were collected from 872 patients who visited the Good Samaritan Kilpauk Lab and Allergy Testing Centre, Chennai, Tamilnadu, India.

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74