Open Source Java Scientific/Engineering Software - Page 28

VMS Draw provides general utilities (e.g. normalization, conversion, and other manipulations of several spectra at the same time) and a flexible graphical user interface (GUI) for an easy use by non-specialists which allows a seamless flow of information between experimentally and theoretically oriented researchers. Finally, it permits effective interactions with other electronic structure codes [e.g., nuclear magnetic resonance (NMR), microwave] even if Gaussian 16 offers the widest set of methods for computational spectroscopy.

This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.

Virtual interactive experiments (vexp) is a framework to promote the developmentand use of cooperative e-learning experiments over the internet. Interactive scientific experiments which can be controlled by various users synchronously.

Tool for testing Web Map Services. It allows to run general random tests of WMS and test based on user-like behaviour.

Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.

WxTools (Weather Data Tool Suite) is a collection of software for collecting and displaying weather data from various weather stations. The software works with the Fine Offset WH290 and similar models (including clones such as the Pro-Signal PSG04173). It also works with the Oregon Scientific WMR180 weather station (and probably similar models such as the WMR88 and WMR100) as well as the older WMR928. Sample weather data is provided.

XDAQ is a software platform designed specifically for the development of distributed data acquisition systems. The development is carried out at CERN, the European Organization for Nuclear Research. Please visit http://xdaq.web.cern.ch

Open extensible system analysis report tool for Java, based on numerous open source analysis initiatives. The XML/XSL batch-processing framework produces integrated HTML/SVG reports of the systems current state and the development over time.

Software for multilingual content analysis

Adevs is a C++ library for building discrete event and mixed discrete event/continuous simulations. This repository is defunct. We have moved to https://github.com/smiz/adevs

BenchLab is a Web Application benchmarking framework using real web browsers.

This is a utility to process and convert drl files to efficient g code, which will help in drilling PCBs using a CNC. The snapshots are based on the linuxcnc axis program to visualize the results of the program using different algorithms.

ezBioNet is a biological modeling and simulation tool of molecular interaction that occurred in a cell. We aim that this software can be used for collecting biological data and making biological models to simulate it by biological researchers. ezBioNet can build a detailed biological model including signal transduction, enzyme kinetics, expression network, etc. It also support number of numerical analysis method to simulate the biological reaction networks.

Basics of a CAD System. Lets users build 3D model of different geometry. Select properties and Analyze using FEM to get stress and displacements under loading.

Freedomotic is an open source, flexible, secure Internet of Things (IoT) development framework, useful to build and manage modern smart spaces. It is targeted to private individuals (home automation) as well as business users (smart retail environments, ambient aware marketing, monitoring and analytics, etc). Freedomotic can interact with well known standard building automation protocols as well as with "do it yourself" solutions. It treats the web, social networks and branded frontends as first class components of the system. [GITHUB REPOSITORY] https://github.com/freedomotic/freedomotic [USERS' MANUAL] http://freedomotic-user-manual.readthedocs.io/ [DEVELOPERS' MANUAL] http://freedomotic-developer-manual.readthedocs.io/ [INTERNATIONAL COMMUNITY] https://groups.google.com/forum/#!forum/freedom-domotics [ITALIAN COMMUNITY] https://groups.google.com/forum/#!forum/freedomotic-it [REPORT AN ISSUE] https://github.com/freedomotic/freedomotic/issues

HaikuVM has been started for hobbyists who develop applications for ARDUINO to open the world of JAVA and leJOS. Yes, you can program an ARDUINO with JAVA! HaikuVM is so small that it even runs on an atmega8 (and the ASURO robot). And yes, you can program an ASURO robot with JAVA! And since version 1.4.0 the RCX lego brick.

A flexible Japanese to English language translation engine that allows multiple results be displayed according to all possible grammar ratings, i.e. a list of results will be displayed instead of only one. Please browse the CVS tree for actual project.

jmathtools, mathematical / scientific java stuff designed to be easily used and modified, not really designed for high performance calculation.

Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)

Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.

The nlpFarm is a Natural Language Processing (NLP) resource where early research prototypes (Java) can evolve into robust and useful open source. Our farmstead collaborates under the OpenNLP initiative, in order to make NLP software publically available.

The nofdp IDSS is an open source application for modeling flood control measures and 1D hydrodynamic flood simulation. Additional modules for ecological and spatial analysis, multicriteria evaluation and communication are included.

This is a map coloring plugin intended for OpenJump. It uses the Five Color Theorem to color an OpenJump layer with five colors such that no two adjacent features have the same color.

openModeller is a complete C++ framework for species potential distribution modelling. The project also includes a graphical user interface, a web service interface and an API for Python.

XML Universal Packet Archiver (PKT) is a platform independant universal file archiving system with pluggable options for encryption, encoding, compression, parity/RAID protection and more.