Open Source Java Scientific/Engineering Software - Page 24

JABM is a Java framework for building agent-based simulation models using a discrete-event simulation framework.

JCalc is GUI calculator written entirely in Java. It can be run cross-platform on any OS with a Java Virtual Machine. It shall be portable, stable, and efficient.

JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.

A mapping application written in Java that displays Ordnance Survey maps downloaded from OS's getamap website or maps from the OpenStreetMap project. It is possible to add new map sources or extra functionality through plugins.

JUnitConv is an universal Units of Measure Converter built as a Java Applet. It supports an unlimited number of Units Categories, Units of Measure and Multiplier Prefixes that could be customized using external text files.

Write VISA instrument drivers in Java for Windows and Linux. Maybe the best way to give a full description is to explain the history of this project. History: This instrument driver project is part of of a non open source data acquisition and analysis project used at Colorado School of Mines, JSeisLab. JSeisLab is a Java port of its predecessor "Spectrum Division for Windows" which is written in VB 6.0. Design: I created a 64-bit JNA wrapper with IVI's visa.h version 5.0 as input to JNAerator (https://github.com/nativelibs4java/JNAerator). Instrument drivers written in Java can use this wrapper. A 64-bit VISA library from either an instrument company (e.g. National Instruments, Tektronix) when running Windows or libvisa (http://www.librevisa.org) when running Linux needs to be installed .

Multipresicion calculator, based on Bigdecimal Java class . It has a library (BigMath) that makes calculations with Bigdecimal. It has also an expression parser to parse the user input. It allows you to store user defined variables and functions . You can operate with them to be used for calculations or for creating new functions with composition. With the new version, you can also calculate the derivative of a function. JDK-17 compatibility You can find more about it at this web site: https://www.frojasg1.com:8443/downloads_web/web/html/calculadora.html?origin=sourceforge

This is a very powerful Schematic and PCB layout tool for electronic Engineer. It is very easy to use. Coming version will add the SPICE features as well as the 3D model. This tool is target for single user, so all the things such as Schematic, PCB layout, SPICE model, 3D models are all combined into a single project file "*.prj" in ZIP file format. Anyone should able to explore and see the structure of files using any zip tool.

Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples.

MRCube is a graphical editing tool of RDF-based contents developed for managing a relationship between RDF and RDFS contents.

MegaTrack is a Java application for hurricane and tropical storm tracking for Atlantic and eastern Pacific storms.

µic is a modelling engine for simulations of microstructural development. It takes localied behaviours as input from the user and integrates the global behaviour, with the calculation of all interactions as required by the application.

Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and graphical summaries of their analyses. Myrtle offers a unique bookmarking facility which allows students to create and reuse named references to their favorite cell ranges. This can help students focus attention on the important relationships among particular rows or columns of data. Myrtle's graphics and reporting features allow students to report back to their instructors their mastery of course content.

ORT is a tool for modelling and flying launch vehicles of arbitrary size and complexity. Unlike OpenRocket, it does not focus on amateur rockets but on real-world launch vehicles. The bundle includes a graphical design tool with an integrated simulation engine for rocket launches. Also included in the bundle is a playback application and a headless driver for logging simulations into spreadsheets. ORT integrates JME3 for 3D rendering.

PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.

This is the Official Software of the Pi-Space Physics Theory created by Martin Brady. I have a B.Sc. in Computer Applications from Dublin City University and I have an interest in software implementation of Physics. The Theory includes a Quantum Theory of Gravity as well as a reworking of Classical versions of Newton's Formulas. The Theory is based on a set of Relativistic Diagrams called Pi-Space Diagrams for those new to the Theory. License :: Creative Commons Attribution License :: Creative Commons Attribution Non-Commercial License V2.0

Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.

User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files

PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.

Java-RFID is a Java programming library for RFID. Its goal is to create an RFID kit-agnostic API ala JDBC. Thus, programmers will write the same code to communicate with any RFID kit. It has been tested with Texas Instruments and Microchip RFID kits.

SARGE - Search And Rescue Game Environment is a multi-player training game for robot operators which also supports agent based robot control for simulation work via TCP.

SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.

This project proposes a virtual laboratory for social scientists interested in the modelling, analysis and behavioral simulation of power relationships within organizations and more generally in systems of collective action. This software is grounded on the works lead by Sibertin-Blanc and Roggero on the formalization of the Sociology of Organised Action [Crozier and Freidberg]. Visit the homepage of the project on soclabproject.wordpress.com for tutorials, examples and further theoretical position.

Pipes is a desktop system which analyzes an AutoCad(TM) drawing of a sprinkler system, checks for flaws and after these are eliminated, adds the size/diameter labels to the drawing. Tutorial: http://users.norwoodlight.com/janh/wink/autopipes-entry.htm

Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.