Open Source Java Scientific/Engineering Software - Page 30

ADOPS is a bioinformatics tool that automatizes the detection of positively selected sites given a set of unaligned nucleotide sequence data. ADOPS implements a complete workflow that integrates three well-known bioinformatic tools: T-Coffee, MrBayes and Codeml (PAML).

This project about providing run-time support for developing Decentralized Autonomic Computing systems (Eclipse Innovation Grand). Currently the project contains a automatic guided vehicle (AGV) simulator and an editor and visualisation as eclipse plugin

This is a framework to develop Contexts and Agents and a Container to run them. The Container lets each Agent interact with the Context and other Agents. The agents are deployed in jar files and each one runs in an exclusive sandbox.

This project is about developing a dog agility trial for the AIBO dog. AIBOs don't go over jumps very well like a biological dog can, but there are lots of obstacles in a typical dog agility trial that an AIBO robotic dog might be ok at.

A.I. security app. Development ceased.

This is a Java Email client for academic purpose. It will include the general email client features and other experimental techniques such as uncertain reasoning, HCI principles. This project is not supported now.

AKME Mobile Maps is a GPS location-based mapping program for BlackBerry OS 4.2+ devices (Curve or newer) to geocode against maps stored on an SDCard in a tiled format, unlike network-dependent mapping programs from Google, Yahoo, and BlackBerry Maps.

This Android Library manages SPI, I2C, GPIO, ADC, UART and PWM in an Embeded System running Android.This library allows you to write Android applications that can use all hardware available in the system.

Alpie implements lp2 [(LP)2, Fabio Ciravegna Univ. of Sheffield] and an extended version of it. The methods in this package can be used to test and verify grammars for different corporas.

alinks is a set of POJO describing pedigree graphs.

The main purpose of AMATOOL is to create an application for semiautomatic mark of text, using XML tags. The texts is typical can be archaeological reports or midleagetextscripts. It is a semiautomtaic editor.

AMASBE (Advanced Multi Agent System Bullwhip Effect) is a bullwhip-effect control system for supply chains based on forecasts that uses Java Agent DEvelopment Framework (JADE).

AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases.

The wholesale power market design proposed by the U.S. Federal Energy Regulatory Commission (FERC) in an April 2003 white paper [FERC 2003] encompasses the following core features: 1. Central management by an independent market operator. 2. A two-settlement system consisting of a day-ahead market supported by a parallel real-time market to ensure continual balancing of supply and demand for power. 3. Management of grid congestion by means of locational marginal pricing (LMP), i.e., the pricing of power by the location and timing of its injection into, or withdrawal from, the transmission grid. 4. market power oversight and mitigation.

AMODA is a unifying application framework for Java. The name Abstract Modeled Application reflects the idea of an API which models general parts of an application on an abstract level. Entirely developed using the Unified Modeling Language (UML).

User friendly LA-ICPMS data reduction software that supports solid phase and fluid inclusion work

Calculator of matrices for android smartphone.

AMoRE is a collection of algorithms that deal with automata, monoids, regular expressions. Learn about the theory - this is not another regexp package.

ANDS PID Client is a generic Java client library for accessing the ANDS Persistent Identifier service and the Digital Object Identifier Service. Written by CSIRO Australia and funded by the ANDS Australian Research Data Commons Project .

ANKOS is Java based framework for simulating epidemiological systems by modelling simulation items and their relationship. Go to the website project and get more information.

ANNALIST (Annotation, Alignment and Scoring Tool) is a scoring tool for the evaluation of the output of text-based semantic annotation systems.

ANNJ, Another Neural Network for Java is a neural network framework for the Java programming language. It is still in an early development stage, currently supporting only feed-forward type networks, but will soon be able to handle many other types.

Interdependent Java frameworks: AMath (abstract numbers support); AFuzzy (fuzzy numbers and methods); AMathSys (flexible solvers of linear and nonlinear algebraic and differential equations); ADSM (multi-criteria ranking and grading of alternatives).

Crawl a set of files, accumulating information on the temporal and spatial extent of the data in each file, for later search and retrieval.

APEX Tools is a collection of utilities used in conjunction with the processing of airborne hyperspectral data developed for the ESA-Prodex supported Airborne Prism EXperiment (APEX).