GNAT download | SourceForge.net

GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID.

March 2017: We started to upload GNAT output on Medline. See files/results/medline/.

Project Activity

See All Activity >

Follow GNAT

GNAT Web Site

Other Useful Business Software

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Get Started Free

Rate This Project

User Reviews

Be the first to post a review of GNAT!

Additional Project Details

Intended Audience

Healthcare Industry, Science/Research

Programming Language

Java

Database Environment

JDBC, MySQL

Related Categories

Java Bio-Informatics Software, Java Medical Software, Java Machine Learning Software

Registered

2010-02-23

Similar Business Software

Fraud.net

Fraudnet's AI-driven platform empowers enterprises to prevent threats, streamline compliance, and manage risk in real-time. Our sophisticated machine learning models continuously learn from billions of transactions to identify anomalies and predict fraud attacks. Our unified solutions:...

See Software
Google Cloud BigQuery

BigQuery is a serverless, multicloud data warehouse that simplifies the process of working with all types of data so you can focus on getting valuable business insights quickly. At the core of Google’s data cloud, BigQuery allows you to simplify data integration, cost effectively and securely...

See Software
Google Cloud Speech-to-Text

Google Cloud’s Speech API processes more than 1 billion voice minutes per month with close to human levels of understanding for many commonly spoken languages. Powered by the best of Google's AI research and technology, Google Cloud's Speech-to-Text API helps you accurately transcribe speech...

See Software
Google AI Studio

Google AI Studio is a unified development platform that helps teams explore, build, and deploy applications using Google’s most advanced AI models, including Gemini 3.5. It brings text, image, audio, and video models together in one interactive playground. With vibe coding, developers can use...

See Software
Gemini Enterprise Agent Platform

Gemini Enterprise Agent Platform is a comprehensive solution from Google Cloud designed to help organizations build, scale, govern, and optimize AI agents. It represents the evolution of Vertex AI, combining advanced model development with new capabilities for agent orchestration and...

See Software
Lockbox LIMS

A sample tracking, test result capture, and inventory management cloud LIMS for life science research, biotech/NGS, and industrial QC labs. Includes regulatory support for CLIA, HIPAA, Part 11, and ISO 17025. Nothing is more critical to a lab’s success than the quality, security, and...

See Software