Open Source Scientific/Engineering Software - Page 54
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Scientific/Engineering Software
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Nest-o-Patch
Software for analysis of patch-clamp recordings and other wave data
This program was designed mainly for preconditioning and analysis of electrophysiological data, including patch-clamp and 2-electrode voltage clamp recordings. The program includes tools both for basic analysis of whole-cell recordings or analysis of single channel properties. Program can display and analyse long traces incuding many sweeps, series and even groups simultaneously. Current amplitudes or time intervals are easily measured. Single channel conductance, kinetics, NPo, as well as number of channels in a patch and their open probability may be estimated with the analysis of dwelling time at each conductance level. The program directly reads files, created by Pulse and PatchMaster software (HEKA Elektronik Dr. Schulze GmbH) as well as ASCII files. However, the program may be useful in various applications when editing and measurements in a 2-dimentional (for example time-current) wave are required. -
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Python module to interface the CLIPS expert system shell library.
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* Model-checking/simulation-checking library for real-time system with dense-time models in C with CRD (Clock-Restriction Diagrams) technology. * Parametric analysis library for linear-hybrid systems in C with HRD (Hybrid-Restriction Diagram) technol
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RasTop is a molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules based on the popular Rasmol software. The program is aimed at the rapid visualization and analysis of molecules.
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The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.
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Spectra processing and analysis tools
SpecTools - an OpenSource software package for quant. spectra analysis
Automated Quantitative Spectroscopic Analysis Combining Background Subtraction, Cosmic-Ray Removal and Peak Fitting programmed in LabVIEW. Current version 1.1.0. Binaries and source available. -
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TileDownloader
OpenStreetMap tile downloader
A windows program for bulk downloading selections of OpenStreetMap tiles from selected servers. Written in Visual Basic -
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TubeKit is a toolkit for creating YouTube crawlers. It allows one to build one's own crawler that can crawl YouTube based on a set of seed queries and collect up to 17 different attributes.
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large number of file formats, and even the possibility to link to JDBC databases. Multi-dimensional matrices as well as generic matrices with a specified object type are supported and very large matrices can be handled even when they do not fit into memory. -
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Uyamak
Numerical simulation software similar to MatLab-Simulink
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galprop
Cosmic-ray propagation and emission processes
Software for cosmic-ray propagation, gamma-rays, synchrotron. Current version (r2766) includes * accurate propagation scheme * polarized synchrotron * free-free emission and absorption * new convection models * anisotropic diffusion * primary positrons * free-escape boundary conditions * new hadronic gamma-ray production models * new injection spectral breaks * upwards compatible with latest HEALPix * improved HEALPix skymap format * full reference output for a sample run * deuterium production by pp fusion * JF12 B-field * hadronic losses Full details in the Explanatory Supplement and README. Now at https://gitlab.mpcdf.mpg.de/aws/galprop Older versions, datasets etc: http://galprop.stanford.edu. See also http://www.mpe.mpg.de/~aws/propagate.html https://sourceforge.net/projects/galplot http://sourceforge.net/projects/galpropskymapco https://sourceforge.net/projects/gcrconvert https://sourceforge.net/projects/galpropsynchrotron synchrotron routines. -
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GPSdings (project name GPStools) is a set of free applications that let you manipulate and analyse GPS data from the command line.
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Spglib is a C-library written for finding crystal symmetry. Symmetry operation, space group, etc, can be obtained using this symmetry finder. It is easy to include this library to your code. For more information, See, http://spglib.sourceforge.net/
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tXtFL is a strategy-based football simulator. Teams can be created from real stats on the web, built through custom designed plays, and then used to coach games or predict scores. Note that as of 2010, all new development is taking place at http://textflex.com/txtfl.
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A multi-procedure, multi platform electron spectrum evaluation program, with special options for atomic physics and XPS/UPS spectroscopy.
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LAPACK++ is a library for high performance linear algebra computations. This version includes support for solving linear systems using LU, Cholesky, QR matrix factorizations, for real and complex matrices.
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UTAC is a Toolfor the TEMPer and TEMPerHum USB Thermometer / Hygrometer. The TEMPer is a small USB Stick who can read the Temperature / Humidity-
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ECG Logger
ECG Logger is a complete Holter system incl. device and firmware.
NEW V3 version with RTC and buzzer (require V3+ ECG Logger Viewer application) The ECG Logger project is a Wearable Cardio Monitor for Long-Term (up to 24h) ECG Data Acquisition and Analysis (aka Holter) with an ECG live (real-time) mode. This project provides a very low-cost open-source "Hardware and Software" for a Cardiac Rhythmic Holter. The hardware has been made very simple and is based on an Arduino Nano micro-controller with boards for SD card mass-storage, instrumentation differential amplifier and RTC. It can help monitoring arrhythmia syndromes such as bradycardia, tachycardia, extra-systoles, pause or flutter. WARNING: In no case it can be use to replace a professional medical examination. Device MUST NOT BE CONNECTED to appliance powered by mains - risk of electrical shocks ************************************************************************************** see also: ECG Logger Viewer application : https://sourceforge.net/projects/ecg-logger-viewer/ -
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L3-3 Test Card Generator
Card generator for the russian L1-3/L3-3 tube tester.
Card generator for the russian L1-3/L3-3 tube tester. WARNING: The software is still in alpha state, so there are definitely some bugs. If you want to use the created cards for real tests, check them manually with EXTREME care first .. else damage or destruction of your tester can easily occur. ESPECIALLY check if multiple conflicting functions are assigned to the same line (by looking on the universal card), which would lead to shorts. No warranties of any kind! Use at your own risk! Most of the old bugs should (still, no guarantees) be fixed by now and lots of functionality added. I created a good amount of cards for myself and they were all fine, so I deceided to make a public alpha release again. I also added a short manual including a few examples. IMPORTANT: Unfortunately life circumstances changed and I'm also not really using those testers anymore, so I'm not really able to maintain it. Feel free to fork if you want to, I would love to see it kept alive. -
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Piko stats
Piko solar inverter data communicator and manager
Piko solar inverter interface. Get online real time data and status. Get also history data. Database management of data. Exports, graphs, ... Manage data and stats using a SQLite or MySQL database. Third party intergration. See the Wiki home page for more informations. -
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A PHP and JavaScript Web mapping framework and demo application for MapServer (see http://mapserver.gis.umn.edu) based on MapScript/PHP.
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Advanced Numerical Instruments 2D
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers. -
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Non-stealth keylogger for Windows. Records mouse and keyboard (precision~10-15ms), log of events (disk size~2.5k/s) + log of operations (~ 0.2k/s). Standalone, with local copy of Python: unzip to install, delete to uninstall.NEW: hidden/visible icon
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COBOL copybook to XML converter
Converts cobol copybooks to Xml/Java objects
CB2XML (CopyBook to XML) is a COBOL CopyBook to XML converter written in Java and based on the SableCC parser generator. This project includes utilities to convert an XML instance file into its COBOL copybook equivalent string buffer and vice versa. Source is now available in GitHub: https://github.com/bmTas/cb2xml