The fastest Smith-Waterman protein database search algorithm on GPUs
We implement a very simple approach. Each read is searched for the jun
smith waterman, gpu, cuda, alignment
The first protein sequence database search on shared-host Xeon Phis
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
Fast global sequence alignment for the masses!
GPU-based DNA sequence alignment program using Smith-Waterman
Fast local sequence alignment for the masses!
JFinisher is software for alignment, editing and manipulation DNA seqs