CUDASW++: Smith-Waterman Algorithm download

CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html

Project Activity

See All Activity >

License

Apache License V2.0, GNU General Public License version 2.0 (GPLv2)

Follow CUDASW++: Smith-Waterman Algorithm

CUDASW++: Smith-Waterman Algorithm Web Site

Other Useful Business Software

Earn up to 16% annual interest with Nexo.

Access competitive interest rates on your digital assets.

Generate interest, borrow against your crypto, and trade a range of cryptocurrencies — all in one platform. Geographic restrictions, eligibility, and terms apply.

Get started with Nexo.

Rate This Project

User Ratings

3.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 3 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 3 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 3 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

User Reviews

Filter Reviews:

All

nkcslyc Posted 2015-07-24

We have already removed the code dependency on CUDA SDK, and the software can be directly compiled using CUDA 5.0 and higher versions.
rogerp58 Posted 2014-07-01

This has NOT been updated for beyond CUDA 4.1. Cutil.h is no longer in CUDA since CUDA 5.0. Now here we are on CUDA 6.0! Please update this software.

Additional Project Details

Operating Systems

Linux

Intended Audience

Developers

User Interface

Command-line

Programming Language

Related Categories

C Bio-Informatics Software

Registered

2009-02-09

Similar Business Software

Bioconductor

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to...

See Software
G6GFINDR System

g6gTech, Inc. is a software development company that creates in-depth search products in the bioinformatics and artificial intelligence (AI) fields. We have recently changed our name from the G6G Consulting Group to emphasize our focus on creating products. Powered by semantic annotation, the...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
BioTuring Browser

Explore hundreds of curated single-cell transcriptome datasets, along with your own data, through interactive visualizations and analytics. The software also supports multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomic. Interactively explore the world's largest single-cell expression...

See Software
MEGA

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis...

See Software
Evo 2

Evo 2 is a genomic foundation model capable of generalist prediction and design tasks across DNA, RNA, and proteins. It utilizes a frontier deep learning architecture to model biological sequences at single-nucleotide resolution, achieving near-linear scaling of compute and memory relative to...

See Software