CUDASW++: Smith-Waterman Algorithm Icon

CUDASW++: Smith-Waterman Algorithm

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The fastest Smith-Waterman protein database search algorithm on GPUs

3.0 Stars (2)
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Download cudasw++v2.0.11.tar.gz
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Description

CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html

CUDASW++: Smith-Waterman Algorithm Web Site

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User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    We have already removed the code dependency on CUDA SDK, and the software can be directly compiled using CUDA 5.0 and higher versions.

    Posted 07/24/2015
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    This has NOT been updated for beyond CUDA 4.1. Cutil.h is no longer in CUDA since CUDA 5.0. Now here we are on CUDA 6.0! Please update this software.

    Posted 07/01/2014
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Additional Project Details

Intended Audience

Developers

User Interface

Command-line

Programming Language

C

Registered

2009-02-09

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