Search Results for "needleman-wunsch algorithm"

Showing 8 open source projects for "needleman-wunsch algorithm"

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  • 1

    spark-msna

    Algorithm on Spark for aligning multiple similar DNA/RNA sequences

    The algorithm uses suffix tree for identifying common substrings and uses a modified Needleman-Wunsch algorithm for pairwise alignments. In order to improve the efficiency of pairwise alignments, an unsupervised learning based on clustering technique is used to create a knowledge base to guide them.
    Downloads: 0 This Week
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  • 2
    Shape Shifter

    Shape Shifter

    SVG icon animation tool for Android, iOS, and the web

    Shape Shifter is a web-app that simplifies the creation of icon animations for Android, iOS, and the web. This tool currently exports to standalone SVGs, SVG spritesheets, and CSS keyframe animations for the web, as well as to AnimatedVectorDrawable format for Android. I am totally open to adding support for other export formats as well, so if you have a format that you'd like to see added in the future, file a feature request! The ability to add/remove points to each path without altering...
    Downloads: 0 This Week
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  • 3
    Scaffold_Builder

    Scaffold_Builder

    Combining de novo and reference-guided assembly with Scaffold_builder

    Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with NeedlemanWunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please cite: "Combining de novo and reference-guided assembly with Scaffold_builder", Source Code for Biology and Medicine 2013.
    Downloads: 0 This Week
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  • 4
    High Performance SW to Searching in a Large Forensic DNA Bank. It performs the Needleman-Wunsch algorithm in order to determine the individuals identity.
    Downloads: 0 This Week
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  • 5
    NeedlemanWunsch

    NeedlemanWunsch

    Fast global sequence alignment for the masses!

    MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/
    Downloads: 0 This Week
    Last Update:
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  • 6
    SmithWaterman

    SmithWaterman

    Fast local sequence alignment for the masses!

    MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/
    Downloads: 0 This Week
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  • 7
    Multi-functional batch sequence aligner incorporating Needleman-Wunsch, Smith-Waterman and Oommen-Kashyap algorithms along with compound alignment of secondary sequences.
    Downloads: 0 This Week
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  • 8
    GSA v1.0
    This is an global sequence alignment tool (GSA) created using visual basic 6.0. In this software, Needleman & Wunsch algorithm is used.
    Downloads: 1 This Week
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