Search Results for "needleman-wunsch"
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Showing 17 open source projects for "needleman-wunsch"
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MediathekView-for-Android
Android App for Mediathekview
...Daraus kann der Benutzer mittels Sender-, Thema- und Titel-Suchliste das gewünschte Programm auswählen. Es wird eine kurze Beschreibung angezeigt, und man kann die Sendung auf Wunsch direkt ansehen, oder aufs Handy laden. Filme können mit VLC oder Allcast (für Chromcast oder internet-fähige Fernseher ) abgespielt werden -
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spark-msna
Algorithm on Spark for aligning multiple similar DNA/RNA sequences
The algorithm uses suffix tree for identifying common substrings and uses a modified Needleman-Wunsch algorithm for pairwise alignments. In order to improve the efficiency of pairwise alignments, an unsupervised learning based on clustering technique is used to create a knowledge base to guide them. -
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Shape Shifter
SVG icon animation tool for Android, iOS, and the web
Shape Shifter is a web-app that simplifies the creation of icon animations for Android, iOS, and the web. This tool currently exports to standalone SVGs, SVG spritesheets, and CSS keyframe animations for the web, as well as to AnimatedVectorDrawable format for Android. I am totally open to adding support for other export formats as well, so if you have a format that you'd like to see added in the future, file a feature request! The ability to add/remove points to each path without altering... -
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abumpack
Fortran library with the Abaqus user material subroutines UMAT/VUMAT
...The Abaqus is a proprietary finite element (FE) code ( http://www.3ds.com/products-services/simulia/products/abaqus/). Users can write subroutines for use with the Abaqus. Linear elastic, isotropic hardening plasticity, Gurson-Tvergaard-Needleman (GTN), Rousselier constitutive models are provided. Quote this code as: A. Shterenlikht, N. A. Alexander, Levenberg-Marquardt vs Powell's dogleg method for Gurson-Tvergaard-Needleman plasticity model, Computer Methods in Applied Mechanics and Engineering 237-240:1-9 (2012). DOI: http://dx.doi.org/10.1016/j.cma.2012.04.018 -
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BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
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Scaffold_Builder
Combining de novo and reference-guided assembly with Scaffold_builder
Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please cite: "Combining de novo and reference-guided assembly with Scaffold_builder", Source Code for Biology and Medicine 2013. -
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High Performance SW to Searching in a Large Forensic DNA Bank. It performs the Needleman-Wunsch algorithm in order to determine the individuals identity.
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Web(b)h wurde aus dem Wunsch geboren, ein einfaches und vernuenftiges Buchhaltungssystem zu haben, das unter allen Betriebssystemen und Oberflaechen funktioniert und deutsches Recht abbildet. web(b)h ist mandanten- und multiuserfaehig. Update V1.21 Patch ist jetzt verfügbar (27.01.2016)
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NeedlemanWunsch
Fast global sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/ -
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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Wunsch Gruß Box
45kb
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Multi-functional batch sequence aligner incorporating Needleman-Wunsch, Smith-Waterman and Oommen-Kashyap algorithms along with compound alignment of secondary sequences.
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This is an global sequence alignment tool (GSA) created using visual basic 6.0. In this software, Needleman & Wunsch algorithm is used.
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Ich stelle den Spritgeld-Rechner vor Er errechnet bei eingabe der gesamt zu fahrenden Kilometer, den Verbrauch auf 100km und dem Aktuellen Spritpreis die Gesamtkosten aus. Auf wunsch teilt er die kosten bei angabe einer gewünschten Anzahl an Personen
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NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
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Bioinformatics program for analysing two (currently) or more (in the future) protein sequences and compare them using a Smith-Waterman and/or Needleman-Wunsch algorithms. Also set on gathering inherent statistical analysis from the process and displaying
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HTML-Editor für provessionelle Webseiten-Erstellung; trennt Inhalt und Design, sodass jede Seite auf Wunsch automatisch in mehreren Designs dargestellt werden kann.
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